Omicron BA.1 and BA.2 variants increase the interactions of SARS-CoV-2 spike glycoprotein with ACE2
Journal of Molecular Graphics and Modelling, Vol. 117, Aralık 2022, ISSN: 1093-3263
GÖLCÜK MERT, YILDIZ AHMET, GÜR MERT
@article{article,
author = {Gölcük Mert, Yıldız Ahmet, GÜR MERT},
title = {Omicron BA.1 and BA.2 variants increase the interactions of SARS-CoV-2 spike glycoprotein with ACE2},
journal = {Journal of Molecular Graphics and Modelling},
year = 2022,
month = 12,
volume = 117
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
SARS-CoV-2 Delta Variant Decreases Nanobody Binding and ACE2 Blocking Effectivity
Journal of Chemical Information and Modeling, Vol. 62, Mayıs 2022, ISSN: 1549-9596
GÖLCÜK MERT, HACISÜLEYMAN AYSİMA, YILMAZ SEMA ZEYNEP, TAKA ELHAN, YILDIZ AHMET, GÜR MERT
@article{article,
author = {Gölcük Mert, Hacısüleyman Aysima, Yılmaz Sema Zeynep, Taka Elhan, Yıldız Ahmet, GÜR MERT},
title = {SARS-CoV-2 Delta Variant Decreases Nanobody Binding and ACE2 Blocking Effectivity},
journal = {Journal of Chemical Information and Modeling},
year = 2022,
month = 5,
volume = 62
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Structural and functional insight into regulation of kinesin-1 by microtubule-associated protein MAP7
Science, Vol. 375, Ocak 2022, ISSN: 0036-8075
FERRO LUKE S., FANG QİANGLİN, ESHUN-WİLSON LİSA, FERNANDES JONATHAN, JACK AMANDA, FARRELL DANİEL P., GÖLCÜK MERT, HUİJBEN TEUN, COSTA KATELYN, GÜR MERT, DİMAİO FRANK, NOGALES EVA, YILDIZ AHMET
@article{article,
author = {Ferro Luke S., Fang Qianglin, Eshun-Wilson Lisa, Fernandes Jonathan, Jack Amanda, Farrell Daniel P., GÖLCÜK MERT, Huijben Teun, Costa Katelyn, GÜR MERT, DiMaio Frank, Nogales Eva, Yıldız Ahmet},
title = {Structural and functional insight into regulation of kinesin-1 by microtubule-associated protein MAP7},
journal = {Science},
year = 2022,
month = 1,
volume = 375
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Exploring conformational transitions during the CHK2 activation via molecular dynamics
simulations.
3rd International Cancer and Ion Channels Congress (CANCERION-2021)., 16 Eylül 2021
GÜR MERT
@inproceedings{inproceedings,
author = {GÜR MERT},
title = {Exploring conformational transitions during the CHK2 activation via molecular dynamics
simulations.},
year = 2021,
month = 9
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Thermodynamic First Law Analysis of Transporters Involved in the
Glutamate/GABA-Glutamine Cycle
23rd Congress on Thermal Science and Technology, 8 Eylül 2021
GÜR MERT, YILMAZ SEMA ZEYNEP, TAKA ELHAN
@inproceedings{inproceedings,
author = {GÜR MERT, YILMAZ SEMA ZEYNEP, TAKA ELHAN},
title = {Thermodynamic First Law Analysis of Transporters Involved in the
Glutamate/GABA-Glutamine Cycle},
year = 2021,
month = 9
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Exploring the binding mechanisms of nanobodies targeting SARS-CoV-2 spike glycoprotein using molecular dynamics simulations
2021 ACS Fall Meeting., Atlanta/AMERİKA BİRLEŞİK DEVLETLERİ, 22 Ağustos 2021
GÖLCÜK MERT, HACISÜLEYMAN AYSİMA, ERMAN BURAK, YILDIZ AHMET, GÜR MERT
@inproceedings{inproceedings,
author = {GÖLCÜK MERT, Hacısüleyman Aysima, ERMAN BURAK, Yıldız Ahmet, GÜR MERT},
title = {Exploring the binding mechanisms of nanobodies targeting SARS-CoV-2 spike glycoprotein using molecular dynamics simulations},
year = 2021,
month = 8
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
SARS-CoV-2 Spike Glikoproteini ile İnsan ACE2 Reseptörü Arasındaki Kritik Etkileşimler.
İTÜ Kimya Mühendisliği 2. Lisansüstü Sempozyumu, 30 Nisan 2021
TAKA ELHAN, YILMAZ SEMA ZEYNEP, GÖLCÜK MERT, KILINÇ CEREN, AKTAŞ UMUT, GÜR MERT
@inproceedings{inproceedings,
author = {TAKA ELHAN, YILMAZ SEMA ZEYNEP, GÖLCÜK MERT, KILINÇ CEREN, AKTAŞ UMUT, GÜR MERT},
title = {SARS-CoV-2 Spike Glikoproteini ile İnsan ACE2 Reseptörü Arasındaki Kritik Etkileşimler.},
year = 2021,
month = 4
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Critical interactions between the SARS-CoV-2 spike glycoprotein and the human ACE2 receptor.
2021 ACS Spring Meeting, 5 Nisan 2021
TAKA ELHAN, YILMAZ SEMA ZEYNEP, GÖLCÜK MERT, KILINÇ CEREN, AKTAŞ UMUT, YILDIZ AHMET, GÜR MERT
@inproceedings{inproceedings,
author = {TAKA ELHAN, YILMAZ SEMA ZEYNEP, GÖLCÜK MERT, KILINÇ CEREN, Aktaş Umut, Yıldız Ahmet, GÜR MERT},
title = {Critical interactions between the SARS-CoV-2 spike glycoprotein and the human ACE2 receptor.},
year = 2021,
month = 4
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Binding Mechanism of Neutralizing Nanobodies Targeting SARS-CoV-2 Spike Glycoprotein
Journal of Chemical Information and Modeling, Vol. 61, Ocak 2021, ISSN: 1549-9596
GÖLCÜK MERT, HACISÜLEYMAN AYSİMA, ERMAN BURAK, YILDIZ AHMET, GÜR MERT
@article{article,
author = {Gölcük Mert, Hacısüleyman Aysima, ERMAN BURAK, Yıldız Ahmet, GÜR MERT},
title = {Binding Mechanism of Neutralizing Nanobodies Targeting SARS-CoV-2 Spike Glycoprotein},
journal = {Journal of Chemical Information and Modeling},
year = 2021,
month = 1,
volume = 61
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
THE FIRST LAW OF THERMODYNAMICS ANALYSIS OF TRANSPORTERS INVOLVED IN THE GLUTAMATE/GABA-GLUTAMINE CYCLE
ISI BILIMI VE TEKNIGI DERGISI-JOURNAL OF THERMAL SCIENCE AND TECHNOLOGY, Vol. 41, No. 2, Ocak 2021, s. 265-276, ISSN: 1300-3615
GÜR MERT, YILMAZ SEMA ZEYNEP, TAKA ELHAN
@article{article,
author = {GÜR MERT, YILMAZ SEMA ZEYNEP, TAKA ELHAN},
title = {THE FIRST LAW OF THERMODYNAMICS ANALYSIS OF TRANSPORTERS INVOLVED IN THE GLUTAMATE/GABA-GLUTAMINE CYCLE},
journal = {ISI BILIMI VE TEKNIGI DERGISI-JOURNAL OF THERMAL SCIENCE AND TECHNOLOGY},
year = 2021,
number = 2,
pages = {265-276},
month = 1,
volume = 41
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Critical Interactions Between the SARS-CoV-2 Spike Glycoprotein and the Human ACE2 Receptor
The Journal of Physical Chemistry B, Vol. 125, Ocak 2021, ISSN: 1520-6106
TAKA ELHAN, YILMAZ SEMA ZEYNEP, GÖLCÜK MERT, KILINÇ CEREN, AKTAŞ UMUT, YILDIZ AHMET, GÜR MERT
@article{article,
author = {TAKA ELHAN, YILMAZ SEMA ZEYNEP, GÖLCÜK MERT, KILINÇ CEREN, AKTAŞ UMUT, Yıldız Ahmet, GÜR MERT},
title = {Critical Interactions Between the SARS-CoV-2 Spike Glycoprotein and the Human ACE2 Receptor},
journal = {The Journal of Physical Chemistry B},
year = 2021,
month = 1,
volume = 125
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Conformational transition of SARS-CoV-2 spike glycoprotein between its closed and open states
JOURNAL OF CHEMICAL PHYSICS, Vol. 153, No. 7, Ağustos 2020, s. 75101, ISSN: 0021-9606
GÜR MERT, TAKA ELHAN, YILMAZ SEMA ZEYNEP, KILINÇ CEREN, AKTAŞ UMUT, GÖLCÜK MERT
@article{article,
author = {GÜR MERT, TAKA ELHAN, YILMAZ SEMA ZEYNEP, KILINÇ CEREN, AKTAŞ UMUT, GÖLCÜK MERT},
title = {Conformational transition of SARS-CoV-2 spike glycoprotein between its closed and open states},
journal = {JOURNAL OF CHEMICAL PHYSICS},
year = 2020,
number = 7,
pages = {75101},
month = 8,
volume = 153
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Molecular dynamics simulations provide molecular insights into the role of HLA‐B51 in Behçet’s disease pathogenesis
Chemical Biology & Drug Design, Vol. 96, No. 1, Temmuz 2020, s. 644-658, ISSN: 1747-0277
GÜR MERT, GÖLCÜK MERT, GÜL AHMET, ERMAN BURAK
@article{article,
author = {GÜR MERT, GÖLCÜK MERT, GÜL AHMET, ERMAN BURAK},
title = {Molecular dynamics simulations provide molecular insights into the role of HLA‐B51 in Behçet’s disease pathogenesis},
journal = {Chemical Biology & Drug Design},
year = 2020,
number = 1,
pages = {644-658},
month = 7,
volume = 96
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
COVID-19 AŞI ve İLAÇ GELİŞTİRME ÇALIŞMALARINDA SPIKE GLİKOPROTEİNİNİN YERİ ve ÖNEMİ
Tüba Günce, No. 63, Mayıs 2020, s. 57-62, ISSN: 1302-9541
GÜR MERT
@article{article,
author = {GÜR MERT},
title = {COVID-19 AŞI ve İLAÇ GELİŞTİRME ÇALIŞMALARINDA SPIKE GLİKOPROTEİNİNİN YERİ ve ÖNEMİ},
journal = {Tüba Günce},
year = 2020,
number = 63,
pages = {57-62},
month = 5
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Thermodynamic first law efficiency of membrane proteins
JOURNAL OF BIOMOLECULAR STRUCTURE AND DYNAMICS, Vol. 38, No. 2, Ocak 2020, s. 439-449, ISSN: 0739-1102
GÜR MERT, GÖLCÜK MERT, YILMAZ SEMA ZEYNEP, TAKA ELHAN
@article{article,
author = {GÜR MERT, GÖLCÜK MERT, YILMAZ SEMA ZEYNEP, TAKA ELHAN},
title = {Thermodynamic first law efficiency of membrane proteins},
journal = {JOURNAL OF BIOMOLECULAR STRUCTURE AND DYNAMICS},
year = 2020,
number = 2,
pages = {439-449},
month = 1,
volume = 38
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Exploring Conformational Transition of 2019 Novel Coronavirus Spike Glycoprotein Between Its Closed and Open States Using Molecular Dynamics Simulations TÜBA Assessment Report on COVID-19 Global Outbreak
2020, Turkish Academy of Sciences Publications
GÜR MERT
@book{book,
author = {GÜR MERT},
title = {Exploring Conformational Transition of 2019 Novel Coronavirus Spike Glycoprotein Between Its Closed and Open States Using Molecular Dynamics Simulations},
booktitle = {TÜBA Assessment Report on COVID-19 Global Outbreak},
year = 2020,
publisher = {Turkish Academy of Sciences Publications}
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Insight into the Mechanochemical Cycle of Cytoplasmic Dynein from Molecular Dynamics simulations
7th International BAU Drug Design Congress, 19 Aralık 2019
GÜR MERT
@inproceedings{inproceedings,
author = {GÜR MERT},
title = {Insight into the Mechanochemical Cycle of Cytoplasmic Dynein from Molecular Dynamics simulations},
year = 2019,
month = 12
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
MOLECULAR DYNAMICS SIMULATIONS OF THE DYNEIN LINKER MOVEMENT
THE 12TH INTERNATIONAL SYMPOSIUM ON HEALTH INFORMATICS AND BIOINFORMATICS, 17 Ekim 2019
GÖLCÜK MERT, TAKA ELHAN, YILMAZ SEMA ZEYNEP, GÜR MERT
@inproceedings{inproceedings,
author = {GÖLCÜK MERT, TAKA ELHAN, YILMAZ SEMA ZEYNEP, GÜR MERT},
title = {MOLECULAR DYNAMICS SIMULATIONS OF THE DYNEIN LINKER MOVEMENT},
year = 2019,
month = 10
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Molecular overview of the role of HLA-B51 in Behçet’s Disease
7th International Congress ofthe Molecular Biology Association of Turkey, İstanbul/TÜRKİYE, 27 Eylül 2019
GÜR MERT, GÖLCÜK MERT, GÜL AHMET, ERMAN BURAK
@inproceedings{inproceedings,
author = {GÜR MERT, GÖLCÜK MERT, GÜL AHMET, ERMAN BURAK},
title = {Molecular overview of the role of HLA-B51 in Behçet’s Disease},
year = 2019,
month = 9
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Modelling Plus-End-Directed Dyneins
7th International Congress ofthe Molecular Biology Association of Turkey, 27 Eylül 2019
GÜR MERT,CAN SİNAN,LACEY SAMUEL,CARTER ANDREW P,YILDIZ AHMET
@inproceedings{inproceedings,
author = {GÜR MERT,CAN SİNAN,LACEY SAMUEL,CARTER ANDREW P,YILDIZ AHMET},
title = {Modelling Plus-End-Directed Dyneins},
year = 2019,
month = 9
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
A novel small-molecule antagonizes PRMT5-mediated KLF4 methylation for targeted therapy
EBioMedicine, Vol. 44, Haziran 2019, s. 98-111, ISSN: 2352-3964
ZHOU ZHUAN, FENG ZHIWEI, HU DONG, YANG PENG, GÜR MERT, BAHAR IVET, CRISTOFANILLI MASSIMO, GRADISHAR WILLIAM J, XIE XIANGQUN, WAN YONG
@article{article,
author = {ZHOU ZHUAN, FENG ZHIWEI, HU DONG, YANG PENG, GÜR MERT, BAHAR IVET, CRISTOFANILLI MASSIMO, GRADISHAR WILLIAM J, XIE XIANGQUN, WAN YONG},
title = {A novel small-molecule antagonizes PRMT5-mediated KLF4 methylation for targeted therapy},
journal = {EBioMedicine},
year = 2019,
pages = {98-111},
month = 6,
volume = 44
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Why protein conformers in molecular dynamics simulations differ from their crystal structures: a thermodynamic insight
TURKISH JOURNAL OF CHEMISTRY, Vol. 43, No. 2, Nisan 2019, s. 394-403, ISSN: 1300-0527
FILIPO PULLARA, WENZHI MAO, GÜR MERT
@article{article,
author = {FILIPO PULLARA, WENZHI MAO, GÜR MERT},
title = {Why protein conformers in molecular dynamics simulations differ from their crystal structures: a thermodynamic insight},
journal = {TURKISH JOURNAL OF CHEMISTRY},
year = 2019,
number = 2,
pages = {394-403},
month = 4,
volume = 43
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Dynein's directionality is controlled by the angle and length of its stalk.
63rd Annual Meeting of the Biophysical-Society, 2 Mart 2019
CAN SİNAN, LACEY SAMUEL, GÜR MERT, CARTER ANDREW P, YILDIZ AHMET
@inproceedings{inproceedings,
author = {Can Sinan, Lacey Samuel, GÜR MERT, Carter Andrew P, Yıldız Ahmet},
title = {Dynein's directionality is controlled by the angle and length of its stalk.},
year = 2019,
month = 3
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Directionality of dynein is controlled by the angle and length of its stalk
Nature, Vol. 566, No. 7744, Şubat 2019, s. 407-410, ISSN: 0028-0836
CAN SINAN, LACEY SAMUEL, GÜR MERT, CARTER ANDREW P, YILDIZ AHMET
@article{article,
author = {CAN SINAN, LACEY SAMUEL, GÜR MERT, CARTER ANDREW P, YILDIZ AHMET},
title = {Directionality of dynein is controlled by the angle and length of its stalk},
journal = {Nature},
year = 2019,
number = 7744,
pages = {407-410},
month = 2,
volume = 566
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Why Protein Conformers in Molecular Dynamics Simulations Differ from Their Crystal Structures: A Thermodynamic Insight
Turkish Journal of Chemistry, 2019
PULLARA F, WENZHİ M, GUR M
@article{article,
author = {Pullara F, Wenzhi M, Gur M},
title = {Why Protein Conformers in Molecular Dynamics Simulations Differ from Their Crystal Structures: A Thermodynamic Insight},
journal = {Turkish Journal of Chemistry},
year = 2019
}
|
|
Thermodynamic First Law Efficiency of Membrane Proteins
Journal of Biomolecular Structure & Dynamics, 2019
GUR M, GOLCUK M, YİLMAZ SZ, TAKA E
@article{article,
author = {Gur M, Golcuk M, Yilmaz SZ, Taka E},
title = {Thermodynamic First Law Efficiency of Membrane Proteins},
journal = {Journal of Biomolecular Structure & Dynamics},
year = 2019
}
|
|
Dynein’s Directionality is Controlled by the Angle and Length of Its Stalk
Nature, 2019
CAN S, LACEY S, GUR M, CARTER A P, YİLDİZ A
@article{article,
author = {Can S, Lacey S, Gur M, Carter A P, Yildiz A},
title = {Dynein’s Directionality is Controlled by the Angle and Length of Its Stalk},
journal = {Nature},
year = 2019
}
|
|
Engineering Plus-end-directed Dyneins
6th International BAU Drug Design Congress, 13 Aralık 2018
GÜR MERT,CAN SİNAN,LACEY SAMUEL,CARTER ANDREW P,YİLDİZ AHMET
@inproceedings{inproceedings,
author = {GÜR MERT,Can Sinan,Lacey Samuel,Carter Andrew P,Yildiz Ahmet},
title = {Engineering Plus-end-directed Dyneins},
year = 2018,
month = 12
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
THERMODYNAMIC FIRST LAW ANALYSIS OF PROTEINS
6th International BAU Drug Design Congress, 13 Aralık 2018
GÜR MERT, GÖLCÜK MERT, YILMAZ SEMA ZEYNEP, TAKA ELHAN
@inproceedings{inproceedings,
author = {GÜR MERT, Gölcük Mert, YILMAZ SEMA ZEYNEP, TAKA ELHAN},
title = {THERMODYNAMIC FIRST LAW ANALYSIS OF PROTEINS},
year = 2018,
month = 12
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Dynamic and Static Differences Between Conformations of HLA-B51 and HLA-B52: Implications for the Pathogenic Mechanisms of HLA-B51 in Behçet’s Disease
6th International BAU Drug Design Congress, 13 Aralık 2018
GÜR MERT,GÜL AHMET,ERMAN BURAK
@inproceedings{inproceedings,
author = {GÜR MERT,GÜL AHMET,ERMAN BURAK},
title = {Dynamic and Static Differences Between Conformations of HLA-B51 and HLA-B52: Implications for the Pathogenic Mechanisms of HLA-B51 in Behçet’s Disease},
year = 2018,
month = 12
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Molecular dynamics simulations of site point mutations in the TPR domain of cyclophilin 40 identify conformational states with distinct dynamic and enzymatic properties
JOURNAL OF CHEMICAL PHYSICS, Vol. 148, No. 14, Nisan 2018, s. 145101, ISSN: 0021-9606
GÜR MERT, BLACKBURN ELIZABETH A, NING JIA, NARAYAN VIKRAM, BALL KATHRYN L, WALKINSHAW MALCOLM D, ERMAN BURAK
@article{article,
author = {GÜR MERT, BLACKBURN ELIZABETH A, NING JIA, NARAYAN VIKRAM, BALL KATHRYN L, WALKINSHAW MALCOLM D, ERMAN BURAK},
title = {Molecular dynamics simulations of site point mutations in the TPR domain of cyclophilin 40 identify conformational states with distinct dynamic and enzymatic properties},
journal = {JOURNAL OF CHEMICAL PHYSICS},
year = 2018,
number = 14,
pages = {145101},
month = 4,
volume = 148
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Investigation of the Effect of Dimerization on the Functional Dynamics of Neurotransmitter: Sodium Symporters
5th International BAU-Drug Design Congress, 19 Ekim 2017
GÜR MERT,CHENG MARY H,ZOMOT ELİA,BAHAR İVET
@inproceedings{inproceedings,
author = {GÜR MERT,CHENG MARY H,ZOMOT ELİA,BAHAR İVET},
title = {Investigation of the Effect of Dimerization on the Functional Dynamics of Neurotransmitter: Sodium Symporters},
year = 2017,
month = 10
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Importance of Dimerization in Facilitating the Functional Dynamics of Neurotransmitter: Sodium Symporters
61st Annual Meeting Biophysical Society, 11 Şubat 2017
GÜR MERT,H CHENG MARY,ZOMOT ELİA,BAHAR IVET
@inproceedings{inproceedings,
author = {GÜR MERT,H Cheng Mary,Zomot Elia,Bahar Ivet},
title = {Importance of Dimerization in Facilitating the Functional Dynamics of Neurotransmitter: Sodium Symporters},
year = 2017,
month = 2
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Effect of Dimerization on the Dynamics of Neurotransmitter:Sodium Symporters
The Journal of Physical Chemistry B, Vol. 121, No. 15, Şubat 2017, s. 3657-3666, ISSN: 1520-6106
GÜR MERT, CHENG MARY H, ZOMOT ELİA, BAHAR İVET
@article{article,
author = {GÜR MERT, CHENG MARY H, ZOMOT ELİA, BAHAR İVET},
title = {Effect of Dimerization on the Dynamics of Neurotransmitter:Sodium Symporters},
journal = {The Journal of Physical Chemistry B},
year = 2017,
number = 15,
pages = {3657-3666},
month = 2,
volume = 121
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Experimental and Theoretical Investigation of Pumpkin Drying in Fluidized Bed Dryer
Uludağ University Journal of The Faculty of Engineering, Vol. 21, No. 2, Ağustos 2016, s. 145, ISSN: 2148-4155
GÜR MERT
@article{article,
author = {GÜR MERT},
title = {Experimental and Theoretical Investigation of Pumpkin Drying in Fluidized Bed Dryer},
journal = {Uludağ University Journal of The Faculty of Engineering},
year = 2016,
number = 2,
pages = {145},
month = 8,
volume = 21
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Interplay between arginine methylation and ubiquitylation regulates KLF4-mediated genome stability and carcinogenesis
Nature Communications, Vol. 6, No. 1, Aralık 2015, s. 8419, ISSN: 2041-1723
DONG HU,GÜR MERT,ZHOU ZHUAN,GAMPER ARMİN,HUNG MİENCHİE,FUJİTA NAOYA,LAN Lİ,BAHAR İVET,WAN YONG
@article{article,
author = {DONG HU,GÜR MERT,ZHOU ZHUAN,GAMPER ARMİN,HUNG MİENCHİE,FUJİTA NAOYA,LAN Lİ,BAHAR İVET,WAN YONG},
title = {Interplay between arginine methylation and ubiquitylation regulates KLF4-mediated genome stability and carcinogenesis},
journal = {Nature Communications},
year = 2015,
number = 1,
pages = {8419},
month = 12,
volume = 6
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Energy landscape of LeuT from molecular simulations
JOURNAL OF CHEMICAL PHYSICS, Vol. 143, No. 24, Aralık 2015, s. 243134, ISSN: 0021-9606
GÜR MERT,ZOMOT ELİA,CHENG MARY HONGYİNG,BAHAR İVET
@article{article,
author = {GÜR MERT,ZOMOT ELİA,CHENG MARY HONGYİNG,BAHAR İVET},
title = {Energy landscape of LeuT from molecular simulations},
journal = {JOURNAL OF CHEMICAL PHYSICS},
year = 2015,
number = 24,
pages = {243134},
month = 12,
volume = 143
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Insight into the dynamics of LeuT from multiscale simulations
Gordon research Conferences (GRC) Mechanism of Membrane Transport, 28 Haziran 2015
GÜR MERT,ZOMOT ELİA,CHENG MARY HONGYİNG,BAHAR İVET
@inproceedings{inproceedings,
author = {GÜR MERT,ZOMOT ELİA,CHENG MARY HONGYİNG,BAHAR İVET},
title = {Insight into the dynamics of LeuT from multiscale simulations},
year = 2015,
month = 6
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Microseconds Simulations Reveal a New Sodium-binding Site and the Mechanism of Sodium-coupled Substrate Uptake by LeuT
JOURNAL OF BIOLOGICAL CHEMISTRY, Vol. 290, No. 1, Ocak 2015, s. 544-555, ISSN: 0021-9258
ZOMOT ELİA,GÜR MERT,BAHAR İVET
@article{article,
author = {ZOMOT ELİA,GÜR MERT,BAHAR İVET},
title = {Microseconds Simulations Reveal a New Sodium-binding Site and the Mechanism of Sodium-coupled Substrate Uptake by LeuT},
journal = {JOURNAL OF BIOLOGICAL CHEMISTRY},
year = 2015,
number = 1,
pages = {544-555},
month = 1,
volume = 290
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Toward Gaining a Mechanistic Understanding of Substrate Transport by LeuT
Gordon research Conferences (GRC) Biopolymers, 1 Haziran 2014
GÜR MERT,ZOMOT ELİA,CHENG MARY HONGYİNG,BAHAR İVET
@inproceedings{inproceedings,
author = {GÜR MERT,ZOMOT ELİA,CHENG MARY HONGYİNG,BAHAR İVET},
title = {Toward Gaining a Mechanistic Understanding of Substrate Transport by LeuT},
year = 2014,
month = 6
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Exploring the Conformational Transitions of Biomolecular Systems Using a Simple Two-State Anisotropic Network Model
PLoS Computational Biology, Vol. 10, No. 4, Nisan 2014, s. 1003521, ISSN: 1553-7358
DAS AVİSEK, GÜR MERT, CHENG MARY HONGYİNG, JO SUNHWAN, BAHAR İVET, ROUX BENOİT
@article{article,
author = {DAS AVİSEK, GÜR MERT, CHENG MARY HONGYİNG, Jo Sunhwan, BAHAR İVET, ROUX BENOİT},
title = {Exploring the Conformational Transitions of Biomolecular Systems Using a Simple Two-State Anisotropic Network Model},
journal = {PLoS Computational Biology},
year = 2014,
number = 4,
pages = {1003521},
month = 4,
volume = 10
}
|
Topic
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|
Comparing Corn Drying in Fluidized Bed Dryer and Convective Tray Dryer Progress in Exergy Energy and the Environment
2014, s. 687-694, Springer International Publishing
GÜR MERT,GÜR MESUT
Mert Gür
Research (Excluding Thesis) BookBook Part
@book{book,
author = {GÜR MERT,GÜR MESUT},
title = {Comparing Corn Drying in Fluidized Bed Dryer and Convective Tray Dryer},
booktitle = {Progress in Exergy Energy and the Environment},
year = 2014,
pages = {687-694},
publisher = {Springer International Publishing}
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Multiscale investigation of biomolecular systems dynamics
American Institute of Chemical Engineers (AIChE) Annual Meeting, San Francisco, 3 Kasım 2013
GÜR MERT,ZOMOT ELİA,BAHAR İVET
@inproceedings{inproceedings,
author = {GÜR MERT,ZOMOT ELİA,BAHAR İVET},
title = {Multiscale investigation of biomolecular systems dynamics},
year = 2013,
month = 11
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Computational design of new peptide inhibitors for amyloid beta aggregation in Alzheimer s disease application of a novel methodology
American Institute of Chemical Engineers (AIChE) Annual Meeting, San Francisco, 3 Kasım 2013
GÜR MERT,ESKİCİ GÖZDE
@inproceedings{inproceedings,
author = {GÜR MERT,ESKİCİ GÖZDE},
title = {Computational design of new peptide inhibitors for amyloid beta aggregation in Alzheimer s disease application of a novel methodology},
year = 2013,
month = 11
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Global Transitions of Proteins Explored by a Multiscale Hybrid Methodology: Application to Adenylate Kinase
Biophysical Journal, Vol. 105, No. 7, Ekim 2013, s. 1643-1652, ISSN: 0006-3495
GÜR MERT, MADURA JEFFRY D, BAHAR İVET
@article{article,
author = {GÜR MERT, MADURA JEFFRY D, BAHAR İVET},
title = {Global Transitions of Proteins Explored by a Multiscale Hybrid Methodology: Application to Adenylate Kinase},
journal = {Biophysical Journal},
year = 2013,
number = 7,
pages = {1643-1652},
month = 10,
volume = 105
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Global motions exhibited by proteins in micro- to milliseconds simulations concur with anisotropic network model predictions
The Journal of Chemical Physics, Vol. 139, No. 12, Eylül 2013, s. 121912, ISSN: 0021-9606
GÜR MERT, ZOMOT ELİA, BAHAR İVET
@article{article,
author = {GÜR MERT, ZOMOT ELİA, BAHAR İVET},
title = {Global motions exhibited by proteins in micro- to milliseconds simulations concur with anisotropic network model predictions},
journal = {The Journal of Chemical Physics},
year = 2013,
number = 12,
pages = {121912},
month = 9,
volume = 139
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Comparing corn drying in fluidized bed dryer and convective tray dryer
The Sixth International Exergy, Energy and Environment Symposium, 1 Temmuz 2013
GÜR MERT,GÜR MESUT
@inproceedings{inproceedings,
author = {GÜR MERT,GÜR MESUT},
title = {Comparing corn drying in fluidized bed dryer and convective tray dryer},
year = 2013,
month = 7
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Computational Design of New Peptide Inhibitors for Amyloid Beta (Aβ) Aggregation in Alzheimer’s Disease: Application of a Novel Methodology
PLoS ONE, Vol. 8, No. 6, Haziran 2013, s. 66178, ISSN: 1932-6203
ESKİCİ GÖZDE,GÜR MERT
@article{article,
author = {ESKİCİ GÖZDE,GÜR MERT},
title = {Computational Design of New Peptide Inhibitors for Amyloid Beta (Aβ) Aggregation in Alzheimer’s Disease: Application of a Novel Methodology},
journal = {PLoS ONE},
year = 2013,
number = 6,
pages = {66178},
month = 6,
volume = 8
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Global motions of proteins observed in micro to milliseconds simulations concur with Anisotropic Network Model predictions
Membrane Protein Structural Dynamics Consortium’s Annual Meeting, 29 Nisan 2013
GÜR MERT,ZOMOT ELİA,BAHAR İVET
@inproceedings{inproceedings,
author = {GÜR MERT,ZOMOT ELİA,BAHAR İVET},
title = {Global motions of proteins observed in micro to milliseconds simulations concur with Anisotropic Network Model predictions},
year = 2013,
month = 4
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Global Transitions or Proteins Explored by a Multiscale Hybrid Methodology: Application to Dopamine Transporter
57th Annual Meeting of the Biophysical-Society, 2 Şubat 2013
GÜR MERT, MADURA JEFFRY, BAHAR IVET
@inproceedings{inproceedings,
author = {GÜR MERT, Madura Jeffry, Bahar Ivet},
title = {Global Transitions or Proteins Explored by a Multiscale Hybrid Methodology: Application to Dopamine Transporter},
year = 2013,
month = 2
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
A simple coarse-grained model to map the transition pathway between two stable conformations using the anisotropic elastic network model.
57th Annual Meeting of the Biophysical-Society, 2 Şubat 2013
DAS AVİSEK, GÜR MERT, BAHAR IVET, ROUX BENOİT
@inproceedings{inproceedings,
author = {Das Avisek, GÜR MERT, Bahar Ivet, Roux Benoit},
title = {A simple coarse-grained model to map the transition pathway between two stable conformations using the anisotropic elastic network model.},
year = 2013,
month = 2
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Quasi-harmonic fluctuations of two bound peptides
Proteins: Structure, Function, and Bioinformatics, Vol. 80, No. 12, Aralık 2012, s. 2769-2779, ISSN: 0887-3585
GÜR MERT,ERMAN BURAK
@article{article,
author = {GÜR MERT,ERMAN BURAK},
title = {Quasi-harmonic fluctuations of two bound peptides},
journal = {Proteins: Structure, Function, and Bioinformatics},
year = 2012,
number = 12,
pages = {2769-2779},
month = 12,
volume = 80
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Transition pathways of Dopamine transporters explored by combining Molecular Dynamics simulations and Monte Carlo sampling of collective modes
Membrane Protein Structural Dynamics Consortium’s Annual Meeting, 1 Mayıs 2012
GÜR MERT,MADURA JEFFRY,BAHAR İVET
@inproceedings{inproceedings,
author = {GÜR MERT,MADURA JEFFRY,BAHAR İVET},
title = {Transition pathways of Dopamine transporters explored by combining Molecular Dynamics simulations and Monte Carlo sampling of collective modes},
year = 2012,
month = 5
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Transition pathways of proteins explored by combining Molecular Dynamics simulations and Monte Carlo sampling of collective modes
Biophysical Society 56th Annual Meeting, Vol. 102, No. 3, 25 Şubat 2012, s. 450
GÜR MERT,MADURA JEFFRY,BAHAR İVET
@inproceedings{inproceedings,
author = {GÜR MERT,MADURA JEFFRY,BAHAR İVET},
title = {Transition pathways of proteins explored by combining Molecular Dynamics simulations and Monte Carlo sampling of collective modes},
year = 2012,
number = 3,
pages = {450},
month = 2,
volume = 102
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Combining Optimal Control Theory and Molecular Dynamics for Protein Folding
PLoS ONE, Vol. 7, No. 1, Ocak 2012, s. 29628, ISSN: 1932-6203
ARKUN ZİYA YAMAN,GÜR MERT
@article{article,
author = {ARKUN ZİYA YAMAN,GÜR MERT},
title = {Combining Optimal Control Theory and Molecular Dynamics for Protein Folding},
journal = {PLoS ONE},
year = 2012,
number = 1,
pages = {29628},
month = 1,
volume = 7
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Transition pathways of enzymes explored by combining the Anisotropic Network Model
Albany 2011: Conversation 17, 14 Aralık 2011
GÜR MERT,BAHAR İVET
@inproceedings{inproceedings,
author = {GÜR MERT,BAHAR İVET},
title = {Transition pathways of enzymes explored by combining the Anisotropic Network Model},
year = 2011,
month = 12
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Pre-existing soft modes of motion uniquely defined by native contact topology facilitate ligand binding to proteins
Protein Science, Vol. 20, No. 10, Ekim 2011, s. 1645-1658, ISSN: 0961-8368
MEİRELES LİDİO,GÜR MERT,BAKAN AHMET,BAHAR İVET
@article{article,
author = {MEİRELES LİDİO,GÜR MERT,BAKAN AHMET,BAHAR İVET},
title = {Pre-existing soft modes of motion uniquely defined by native contact topology facilitate ligand binding to proteins},
journal = {Protein Science},
year = 2011,
number = 10,
pages = {1645-1658},
month = 10,
volume = 20
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Protein folding using coarse grained optimal control and Molecular Dynamics
18th International Federation of Automatic Control (IFAC) World Congress, 28 Ağustos 2011
ARKUN ZİYA YAMAN,GÜR MERT
@inproceedings{inproceedings,
author = {ARKUN ZİYA YAMAN,GÜR MERT},
title = {Protein folding using coarse grained optimal control and Molecular Dynamics},
year = 2011,
month = 8
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Quasi-harmonic analysis of mode coupling in fluctuating native proteins
Physical Biology, Vol. 7, No. 4, Aralık 2010, s. 46006, ISSN: 1478-3975
GÜR MERT,ERMAN BURAK
@article{article,
author = {GÜR MERT,ERMAN BURAK},
title = {Quasi-harmonic analysis of mode coupling in fluctuating native proteins},
journal = {Physical Biology},
year = 2010,
number = 4,
pages = {46006},
month = 12,
volume = 7
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Anharmonicity, mode-coupling and entropy in a fluctuating native protein
Physical Biology, Vol. 7, No. 4, Aralık 2010, s. 46005, ISSN: 1478-3975
KABAKÇIOĞLU ALKAN,YURET DENİZ,GÜR MERT,ERMAN BURAK
@article{article,
author = {KABAKÇIOĞLU ALKAN,YURET DENİZ,GÜR MERT,ERMAN BURAK},
title = {Anharmonicity, mode-coupling and entropy in a fluctuating native protein},
journal = {Physical Biology},
year = 2010,
number = 4,
pages = {46005},
month = 12,
volume = 7
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Harmonic fluctuations of two bound peptides
Gordon Research Conference (GRC) Biopolymers, 6 Haziran 2010
GÜR MERT,ERMAN BURAK
@inproceedings{inproceedings,
author = {GÜR MERT,ERMAN BURAK},
title = {Harmonic fluctuations of two bound peptides},
year = 2010,
month = 6
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Coupling between energy and residue position fluctuations in native proteins
2010 5th International Symposium on Health Informatics and Bioinformatics, 20 Nisan 2010
GÜR MERT,ERMAN BURAK
@inproceedings{inproceedings,
author = {GÜR MERT,ERMAN BURAK},
title = {Coupling between energy and residue position fluctuations in native proteins},
year = 2010,
month = 4
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Statistical thermodynamics and mode analysis of residue fluctuations in native proteins
Gordon Research Conference (GRC) Computer Aided Drug Design, 19 Temmuz 2009
GÜR MERT,ERMAN BURAK
@inproceedings{inproceedings,
author = {GÜR MERT,ERMAN BURAK},
title = {Statistical thermodynamics and mode analysis of residue fluctuations in native proteins},
year = 2009,
month = 7
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Statistical thermodynamics of residue fluctuations in native proteins
JOURNAL OF CHEMICAL PHYSICS, Vol. 130, No. 9, Mart 2009, s. 95103, ISSN: 0021-9606
YOĞURTÇU OSMAN NURİ,GÜR MERT,ERMAN BURAK
@article{article,
author = {YOĞURTÇU OSMAN NURİ,GÜR MERT,ERMAN BURAK},
title = {Statistical thermodynamics of residue fluctuations in native proteins},
journal = {JOURNAL OF CHEMICAL PHYSICS},
year = 2009,
number = 9,
pages = {95103},
month = 3,
volume = 130
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Statistical thermodynamics of residue fluctuations in native proteins
Biophysical Society 53rd Annual Meeting, 28 Şubat 2009
GÜR MERT,ERMAN BURAK
@inproceedings{inproceedings,
author = {GÜR MERT,ERMAN BURAK},
title = {Statistical thermodynamics of residue fluctuations in native proteins},
year = 2009,
month = 2
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|
Determining binding forces between two peptides using the Gaussian Network Model
XXI Sitges Conference-Statistical Mechanics of Biopyhsics, 2 Haziran 2008
GÜR MERT,ERMAN BURAK
@inproceedings{inproceedings,
author = {GÜR MERT,ERMAN BURAK},
title = {Determining binding forces between two peptides using the Gaussian Network Model},
year = 2008,
month = 6
}
|
Topic
Yayın ile ilgili açıklama girilmemiştir.
|