Detailed evaluation of cancer sequencing pipelines in different microenvironments and heterogeneity levels
TURKISH JOURNAL OF BIOLOGY, Vol. 45, No. 2, Nisan 2021, s. 114-126, ISSN: 1300-0152
KISAKOL BATUHAN, SARIHAN ŞAHİN, ERGÜN MEHMET ARİF, BAYSAN MEHMET
@article{article,
author = {KISAKOL BATUHAN, SARIHAN ŞAHİN, ERGÜN MEHMET ARİF, BAYSAN MEHMET},
title = {Detailed evaluation of cancer sequencing pipelines in different microenvironments and heterogeneity levels},
journal = {TURKISH JOURNAL OF BIOLOGY},
year = 2021,
number = 2,
pages = {114-126},
month = 4,
volume = 45
}
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Optimizing pipeline combinations for cancer sequencing
THE 13TH INTERNATIONAL SYMPOSIUM ON HEALTH INFORMATICS AND BIOINFORMATICS (HIBIT), İstanbul/TÜRKİYE, 22 Ekim 2020
KISAKOL BATUHAN, SARIHAN ŞAHİN, ERGÜN MEHMET ARİF, BAYSAN MEHMET
@inproceedings{inproceedings,
author = {KISAKOL BATUHAN, SARIHAN ŞAHİN, ERGÜN MEHMET ARİF, BAYSAN MEHMET},
title = {Optimizing pipeline combinations for cancer sequencing},
year = 2020,
month = 10
}
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EVALUATION OF CANCER SEQUENCING PIPELINES
ON PATIENT SAMPLES WITH DIFFERENT
HETEROGENEITY LEVELS
THE 12TH INTERNATIONAL SYMPOSIUM ON HEALTH INFORMATICS AND BIOINFORMATICS (HIBIT), İZMİR/TÜRKİYE, 17 Ekim 2019
SARIHAN ŞAHİN, KISAKOL BATUHAN, BAYSAN MEHMET
@inproceedings{inproceedings,
author = {SARIHAN ŞAHİN, KISAKOL BATUHAN, BAYSAN MEHMET},
title = {EVALUATION OF CANCER SEQUENCING PIPELINES
ON PATIENT SAMPLES WITH DIFFERENT
HETEROGENEITY LEVELS},
year = 2019,
month = 10
}
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Predicting the Predisposition to Colorectal Cancer based on SNP Profiles of Immune Checkpoints using Supervised Learning Models
VII. International Congress of Molecular Medicine, İstanbul/TÜRKİYE, 5 Eylül 2019
ÇAKMAK ALİ,İBRAHİMZADA ALİ REZA,ARIKAN SOYKAN,AYAZ HÜZEYFE,DEMİRKOL ŞEYDA,SÖNMEZ DİLARA,HAKAN MEHMET TOLGAHAN,TURAN SÜRMEN SAİME,HOROZOĞLU CEM,KÜÇÜKHÜSEYİN ÖZLEM,KIRAN BAYRAM,ZEYBEK ŞAKİR ÜMİT,BAYSAN MEHMET,YAYLIM İLHAN
@inproceedings{inproceedings,
author = {ÇAKMAK ALİ,İbrahimzada Ali Reza,Arıkan Soykan,Ayaz Hüzeyfe,Demirkol Şeyda,Sönmez Dilara,HAKAN MEHMET TOLGAHAN,Turan Sürmen Saime,HOROZOĞLU CEM,KÜÇÜKHÜSEYİN ÖZLEM,KIRAN BAYRAM,ZEYBEK ŞAKİR ÜMİT,BAYSAN MEHMET,YAYLIM İLHAN},
title = {Predicting the Predisposition to Colorectal Cancer based on SNP Profiles of Immune Checkpoints using Supervised Learning Models},
year = 2019,
month = 9
}
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Multi-Dimensional Data Visualization Related to Hepatocellular Carcinoma: Another Step to Precision Medicine for Diagnosis and Prognosis of Liver Cancer
18TH BIO IT WORLD CONFERENCE EXPO 19, 16 Nisan 2019
AKTAŞ RANAN GÜLHAN, DÖNMEZ ÇAKIL YAPRAK, AKBULUT ZEYNEP, İSAN HATİCE, KARAGÖZ AYÇA, KAYALI DAMLA, SİTAR MUSTAFA ERİNÇ, KISAKOL BATUHAN, BAYSAN MEHMET
@inproceedings{inproceedings,
author = {AKTAŞ RANAN GÜLHAN, DÖNMEZ ÇAKIL YAPRAK, AKBULUT ZEYNEP, İSAN HATİCE, KARAGÖZ AYÇA, KAYALI DAMLA, SİTAR MUSTAFA ERİNÇ, KISAKOL BATUHAN, BAYSAN MEHMET},
title = {Multi-Dimensional Data Visualization Related to Hepatocellular Carcinoma: Another Step to Precision Medicine for Diagnosis and Prognosis of Liver Cancer},
year = 2019,
month = 4
}
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A Flexible and Easy-to-use Pipeline for Next Generation Sequencing Analysis of Cancer Samples
THE 11TH INTERNATIONAL SYMPOSIUM ON HEALTH INFORMATICS AND BIOINFORMATICS (HIBIT), ANTALYA/TÜRKİYE, 25 Ekim 2018
SARIHAN ŞAHİN, KISAKOL BATUHAN, BAYSAN MEHMET
@inproceedings{inproceedings,
author = {SARIHAN ŞAHİN, KISAKOL BATUHAN, BAYSAN MEHMET},
title = {A Flexible and Easy-to-use Pipeline for Next Generation Sequencing Analysis of Cancer Samples},
year = 2018,
month = 10
}
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Identification of Genomic Alterations Associated with Tumor Aggression in Tumor Subtypes
THE 11TH INTERNATIONAL SYMPOSIUM ON HEALTH INFORMATICS AND BIOINFORMATICS (HIBIT), ANTALYA/TÜRKİYE, 25 Ekim 2018
KISAKOL BATUHAN, SARIHAN ŞAHİN, BAYSAN MEHMET
@inproceedings{inproceedings,
author = {KISAKOL BATUHAN, SARIHAN ŞAHİN, BAYSAN MEHMET},
title = {Identification of Genomic Alterations Associated with Tumor Aggression in Tumor Subtypes},
year = 2018,
month = 10
}
|
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Kanser arastırma ve biyoinformatik
7. Multidisipliner Kanser Araştırma & 1. Temel Onkoloji Kongresi, İzmir/TÜRKİYE, 11 Ekim 2018
BAYSAN MEHMET
@inproceedings{inproceedings,
author = {BAYSAN MEHMET},
title = {Kanser arastırma ve biyoinformatik},
year = 2018,
month = 10
}
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Homojen Glioblastoma Örneklerinin Yüksek Çözünürlüklü Genetik Teknolojiler ile Analizi
Academic Platform Journal of Engineering and Science, Vol. 6, Ocak 2018, s. 63-71, ISSN: 2147-4575 / 2147-4575
BAYSAN MEHMET
@article{article,
author = {BAYSAN MEHMET},
title = {Homojen Glioblastoma Örneklerinin Yüksek Çözünürlüklü Genetik Teknolojiler ile Analizi},
journal = {Academic Platform Journal of Engineering and Science},
year = 2018,
pages = {63-71},
month = 1,
volume = 6
}
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Detailed longitudinal sampling of glioma stem cells in situ reveals Chr7 gain and Chr10 loss as repeated events in primary tumor formation and recurrence
INTERNATIONAL JOURNAL OF CANCER, Vol. 141, No. 10, Mayıs 2017, s. 2002-2013, ISSN: 0020-7136
BAYSAN MEHMET,WOOLARD KEVİN,CAM MARGARET C.,ZHANG WEİ,SONG HUA,KOTLİAROVA SVETLANA,BALAMATSİAS DEMOSTHENES,LİNKOUS AMANDA,AHN SUSİE,WALLİNG JENNİFER,BELOVA GALİNA I.,FİNE HOWARD A.
@article{article,
author = {BAYSAN MEHMET,Woolard Kevin,Cam Margaret C.,Zhang Wei,Song Hua,Kotliarova Svetlana,Balamatsias Demosthenes,Linkous Amanda,Ahn Susie,Walling Jennifer,Belova Galina I.,Fine Howard A.},
title = {Detailed longitudinal sampling of glioma stem cells in situ reveals Chr7 gain and Chr10 loss as repeated events in primary tumor formation and recurrence},
journal = {INTERNATIONAL JOURNAL OF CANCER},
year = 2017,
number = 10,
pages = {2002-2013},
month = 5,
volume = 141
}
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Master Regulators, Regulatory Networks, and Pathways of Glioblastoma Subtypes
Cancer Informatics, Vol. 13, Temmuz 2016, s. 33-44, ISSN: 1176-9351
BOZDAG SERDAR,Lİ AİGUO,BAYSAN MEHMET,FİNE HOWARD A.
@article{article,
author = {Bozdag Serdar,Li Aiguo,BAYSAN MEHMET,Fine Howard A.},
title = {Master Regulators, Regulatory Networks, and Pathways of Glioblastoma Subtypes},
journal = {Cancer Informatics},
year = 2016,
pages = {33-44},
month = 7,
volume = 13
}
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Gene expression profiles of autophagy-related genes in multiple sclerosis
GENE, Vol. 588, No. 1, Mayıs 2016, s. 38-46, ISSN: 0378-1119
IGCİ MEHRİ,BAYSAN MEHMET,YİGİTER REMZİ,ULASLİ MUSTAFA,GEYİK SİRMA,BAYRAKTAR RECEP,BOZGEYİK IBRAHİM,BOZGEYİK ESRA,BAYRAM ALİ,CAKMAK ECİR ALİ
@article{article,
author = {Igci Mehri,BAYSAN MEHMET,Yigiter Remzi,Ulasli Mustafa,Geyik Sirma,Bayraktar Recep,Bozgeyik Ibrahim,Bozgeyik Esra,Bayram Ali,Cakmak Ecir Ali},
title = {Gene expression profiles of autophagy-related genes in multiple sclerosis},
journal = {GENE},
year = 2016,
number = 1,
pages = {38-46},
month = 5,
volume = 588
}
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Micro-Environment Causes Reversible Changes in DNA Methylation and mRNA Expression Profiles in Patient-Derived Glioma Stem Cells
PLOS ONE, Vol. 9, No. 4, Mayıs 2014, ISSN: 1932-6203
BAYSAN MEHMET,WOOLARD KEVİN,BOZDAG SERDAR,RİDDİCK GREGORY,KOTLİAROVA SVETLANA,CAM MARGARET C.,BELOVA GALİNA I.,AHN SUSİE,ZHANG WEİ,SONG HUA,WALLİNG JENNİFER,STEVENSON HOLLY,MELTZER PAUL,FİNE HOWARD A.
@article{article,
author = {BAYSAN MEHMET,Woolard Kevin,Bozdag Serdar,Riddick Gregory,Kotliarova Svetlana,Cam Margaret C.,Belova Galina I.,Ahn Susie,Zhang Wei,Song Hua,Walling Jennifer,Stevenson Holly,Meltzer Paul,Fine Howard A.},
title = {Micro-Environment Causes Reversible Changes in DNA Methylation and mRNA Expression Profiles in Patient-Derived Glioma Stem Cells},
journal = {PLOS ONE},
year = 2014,
number = 4,
month = 5,
volume = 9
}
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Approximation algorithm for the on-line multi-customer two-level supply chain scheduling problem
OPERATIONS RESEARCH LETTERS, Vol. 41, No. 6, Mayıs 2013, s. 710-714, ISSN: 0167-6377
AVERBAKH IGOR,BAYSAN MEHMET
@article{article,
author = {Averbakh Igor,BAYSAN MEHMET},
title = {Approximation algorithm for the on-line multi-customer two-level supply chain scheduling problem},
journal = {OPERATIONS RESEARCH LETTERS},
year = 2013,
number = 6,
pages = {710-714},
month = 5,
volume = 41
}
|
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Age-Specific Signatures of Glioblastoma at the Genomic, Genetic, and Epigenetic Levels
PLOS ONE, Vol. 8, No. 4, Mayıs 2013, ISSN: 1932-6203
BOZDAG SERDAR,Lİ AİGUO,RİDDİCK GREGORY,KOTLİAROV YURİ,BAYSAN MEHMET,IWAMOTO FABİO M.,CAM MARGARET C.,KOTLİAROVA SVETLANA,FİNE HOWARD A.
@article{article,
author = {Bozdag Serdar,Li Aiguo,Riddick Gregory,Kotliarov Yuri,BAYSAN MEHMET,Iwamoto Fabio M.,Cam Margaret C.,Kotliarova Svetlana,Fine Howard A.},
title = {Age-Specific Signatures of Glioblastoma at the Genomic, Genetic, and Epigenetic Levels},
journal = {PLOS ONE},
year = 2013,
number = 4,
month = 5,
volume = 8
}
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Batching and delivery in semi-online distribution systems
DISCRETE APPLIED MATHEMATICS, Vol. 161, Mayıs 2013, s. 28-42, ISSN: 0166-218X
AVERBAKH IGOR,BAYSAN MEHMET
@article{article,
author = {Averbakh Igor,BAYSAN MEHMET},
title = {Batching and delivery in semi-online distribution systems},
journal = {DISCRETE APPLIED MATHEMATICS},
year = 2013,
pages = {28-42},
month = 5,
volume = 161
}
|
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G-Cimp Status Prediction Of Glioblastoma Samples Using mRNA Expression Data
PLOS ONE, Vol. 7, No. 11, Mayıs 2012, ISSN: 1932-6203
BAYSAN MEHMET,BOZDAG SERDAR,CAM MARGARET C.,KOTLİAROVA SVETLANA,AHN SUSİE,WALLİNG JENNİFER,KİLLİAN JONATHAN K.,STEVENSON HOLLY,MELTZER PAUL,FİNE HOWARD A.
@article{article,
author = {BAYSAN MEHMET,Bozdag Serdar,Cam Margaret C.,Kotliarova Svetlana,Ahn Susie,Walling Jennifer,Killian Jonathan K.,Stevenson Holly,Meltzer Paul,Fine Howard A.},
title = {G-Cimp Status Prediction Of Glioblastoma Samples Using mRNA Expression Data},
journal = {PLOS ONE},
year = 2012,
number = 11,
month = 5,
volume = 7
}
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Histone Demethylase Jumonji D3 (JMJD3) as a Tumor Suppressor by Regulating p53 Protein Nuclear Stabilization
PLOS ONE, Vol. 7, No. 12, Mayıs 2012, ISSN: 1932-6203
ENE CHİBAWANYE I.,EDWARDS LİNCOLN,RİDDİCK GREGORY,BAYSAN MEHMET,WOOLARD KEVİN,KOTLİAROVA SVETLANA,LAİ CHEN,BELOVA GALİNA I.,CAM MARGARET C.,WALLİNG JENNİFER,ZHOU MİNG,STEVENSON HOLLY,KİM HONG SUG,KİLLİAN JONATHAN K.,VEENSTRA TİMOTHY,BAİLEY ROLANDA,SONG HUA,ZHANG WEİ,FİNE HOWARD A.
@article{article,
author = {Ene Chibawanye I.,Edwards Lincoln,Riddick Gregory,BAYSAN MEHMET,Woolard Kevin,Kotliarova Svetlana,Lai Chen,Belova Galina I.,Cam Margaret C.,Walling Jennifer,Zhou Ming,Stevenson Holly,Kim Hong Sug,Killian Jonathan K.,Veenstra Timothy,Bailey Rolanda,Song Hua,Zhang Wei,Fine Howard A.},
title = {Histone Demethylase Jumonji D3 (JMJD3) as a Tumor Suppressor by Regulating p53 Protein Nuclear Stabilization},
journal = {PLOS ONE},
year = 2012,
number = 12,
month = 5,
volume = 7
}
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Polynomial time solution to minimum forwarding set problem in wireless networks under disk coverage model
AD HOC NETWORKS, Vol. 10, No. 7, Mayıs 2012, s. 1253-1266, ISSN: 1570-8705
BAYSAN MEHMET,SARAC KAMİL,CHANDRASEKARAN R.
@article{article,
author = {BAYSAN MEHMET,Sarac Kamil,Chandrasekaran R.},
title = {Polynomial time solution to minimum forwarding set problem in wireless networks under disk coverage model},
journal = {AD HOC NETWORKS},
year = 2012,
number = 7,
pages = {1253-1266},
month = 5,
volume = 10
}
|
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Semi-online two-level supply chain scheduling problems
JOURNAL OF SCHEDULING, Vol. 15, No. 3, Mayıs 2012, s. 381-390, ISSN: 1094-6136
AVERBAKH IGOR,BAYSAN MEHMET
@article{article,
author = {Averbakh Igor,BAYSAN MEHMET},
title = {Semi-online two-level supply chain scheduling problems},
journal = {JOURNAL OF SCHEDULING},
year = 2012,
number = 3,
pages = {381-390},
month = 5,
volume = 15
}
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On a labeling problem in graphs
DISCRETE APPLIED MATHEMATICS, Vol. 159, No. 8, Mayıs 2011, s. 746-759, ISSN: 0166-218X
CHANDRASEKARAN R.,DAWANDE M.,BAYSAN MEHMET
@article{article,
author = {Chandrasekaran R.,Dawande M.,BAYSAN MEHMET},
title = {On a labeling problem in graphs},
journal = {DISCRETE APPLIED MATHEMATICS},
year = 2011,
number = 8,
pages = {746-759},
month = 5,
volume = 159
}
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A Polynomial Time Solution to Minimum Forwarding Set Problem in Wireless Networks under Unit Disk Coverage Model
IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS, Vol. 20, No. 7, Mayıs 2009, s. 913-924, ISSN: 1045-9219
BAYSAN MEHMET,SARAC KAMİL,CHANDRASEKARAN R.,BEREG SERGEY
@article{article,
author = {BAYSAN MEHMET,Sarac Kamil,Chandrasekaran R.,Bereg Sergey},
title = {A Polynomial Time Solution to Minimum Forwarding Set Problem in Wireless Networks under Unit Disk Coverage Model},
journal = {IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS},
year = 2009,
number = 7,
pages = {913-924},
month = 5,
volume = 20
}
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Variable power broadcast using local information in ad hoc networks
AD HOC NETWORKS, Vol. 6, No. 5, Mayıs 2008, s. 675-695, ISSN: 1570-8705
CHİGANMİ AVİNASH,BAYSAN MEHMET,SARAC KAMİL,PRAKASH RAVİ
@article{article,
author = {Chiganmi Avinash,BAYSAN MEHMET,Sarac Kamil,Prakash Ravi},
title = {Variable power broadcast using local information in ad hoc networks},
journal = {AD HOC NETWORKS},
year = 2008,
number = 5,
pages = {675-695},
month = 5,
volume = 6
}
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Cluster based approaches for end-to-end complete feedback collection in multicast
2006 IEEE INTERNATIONAL PERFORMANCE COMPUTING AND COMMUNICATIONS CONFERENCE, VOLS 1 AND 2, No. null, 10 Nisan 2006, s. 31
BAYSAN MEHMET,SARAC KAMİL
@inproceedings{inproceedings,
author = {BAYSAN MEHMET,Sarac Kamil},
title = {Cluster based approaches for end-to-end complete feedback collection in multicast},
year = 2006,
number = null,
pages = {31},
month = 4
}
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Improving energy savings in power adaptive broadcasting in MANETs
FIRST INTERNATIONAL CONFERENCE ON BROADBAND NETWORKS, PROCEEDINGS, No. null, 25 Ekim 2004, s. 745-747
BAYSAN MEHMET,GOWDAMACHANDRAN SAİPRİYA,SARAC KAMİL
@inproceedings{inproceedings,
author = {BAYSAN MEHMET,Gowdamachandran Saipriya,Sarac Kamil},
title = {Improving energy savings in power adaptive broadcasting in MANETs},
year = 2004,
number = null,
pages = {745-747},
month = 10
}
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