@article{article, author = {HACIOSMANOĞLU EBRU, Önsu Kemal Alper, SAYLAN CEMİL CAN, GÜNÇER BAŞAK, BADAY SEFER, BEKTAŞ MUHAMMET}, title = {Depolymerization of actin filaments by Cucurbitacin I throughbinding G-actin}, journal = {Food Science & Nutrition}, year = 2024, number = 2, pages = {881-889}, month = 2, volume = 12 }

@article{article, author = {Akcay Saliha Nur,SAYLAN CEMİL CAN,TEKİN ADEM,BADAY SEFER}, title = {Optimization of CHARMM force field parameters for ryanodine receptor inhibitory drug dantrolene using FFTK and FFParam}, journal = {Journal of Molecular Modeling}, year = 2024, number = 2, month = 1, volume = 30 }

@inproceedings{inproceedings, author = {BADAY SEFER}, title = {Identification of Novel Androgen Receptor Conformations For Targeting Prostate Cancer}, year = 2023, month = 12 }

@inproceedings{inproceedings, author = {GÜL GÜLŞAH, ŞENSOY ÖZGE, BADAY SEFER, GÜLYÜZ SEVGİ, YILMAZ ÖZGÜR}, title = {Epilepsi - Teşhis, Görüntüleme ve Tedavisinde Kullanılabilecek Peptitlerin Modellenmesi}, year = 2023, month = 9 }

@inproceedings{inproceedings, author = {DAL YÖNTEM FULYA, BADAY SEFER, BULUT ŞEYMA, Ghaderkalankesh Behnaz, HACIOSMANOĞLU EBRU, BUDAK GÜLDEN, BEKTAŞ MUHAMMET, AKÇAKAYA HANDAN}, title = {Development of Novel Mitochondrial Fission Inhibitors Targeting Drp1-GTPase Interaction}, year = 2022, month = 8 }

@book{book, author = {BAYYURT NİZAMETTİN, BADAY SEFER}, title = {Descriptive Analytics}, booktitle = {Business Analytics for Professionals}, year = 2022, publisher = {Springer} }

@inproceedings{inproceedings, author = {Bande Abdulsalam Yazid,BADAY SEFER}, title = {Swift-Docking: Neural Network-Based Method to Speed Up Molecular Docking}, year = 2021, month = 12 }

@inproceedings{inproceedings, author = {Uludağ Saliha Nur, BADAY SEFER}, title = {Ryanodin Reseptörü İnhibitörü Dantrolen İçin CHARMM Kuvvet Alanı Optimizasyonu}, year = 2021, month = 10 }

@inproceedings{inproceedings, author = {BADAY SEFER, Usta Numan Nusret}, title = {Comparison and assessment of speed and accuracy of AutoDock Vina and AutoDock CrankPep for short peptide docking }, year = 2021, month = 9 }

@article{article, author = {BADAY SEFER}, title = {Drug Repurposing Against SARS-CoV-2: Targeting NSP16-NSP10 Interaction}, journal = {Journal of the Turkish Chemical Society Section A: Chemistry}, year = 2021, number = 3, pages = {933-940}, month = 8, volume = 8 }

@inproceedings{inproceedings, author = {BADAY SEFER}, title = {Development of Optimal Linkers for Stapled Peptides Using Molecular Simulations}, year = 2021, month = 4 }

@article{article, author = {ATASEVER ARSLAN BELKIS, KAYA BUŞRA, ŞAHİN ONUR, BADAY SEFER, SAYLAN CEMİL CAN, ÜLKÜSEVEN BAHRİ}, title = {The iron(III) and nickel(II) complexes with tetradentate thiosemicarbazones. Synthesis, experimental, theoretical characterization, and antiviral effect against SARS-CoV-2}, journal = {Journal of Molecular Structure}, year = 2021, month = 1, volume = 1246 }

@article{article, author = {BADAY SEFER}, title = {Optimization of CHARMM force field parameters of a prostate cancer drug enzalutamide}, journal = {Journal of Molecular Graphics and Modelling}, year = 2020, number = 107541, pages = {1-9}, month = 5, volume = 96 }

@inproceedings{inproceedings, author = {BADAY SEFER}, title = {Development of Optimal Linkers for Stapled Peptides Using Molecular Simulations}, year = 2017, month = 3 }

@article{article, author = {Arslan Elif,Koc Meryem Hatip,Uysal Ozge,Dikecoglu Begum,Topal Ahmet E.,Garifullin Ruslan,Ozkan Alper D.,DANA AYKUTLU,Hermida-Merino Daniel,Castelletto Valeria,Edwards-Gayle Charlotte,BADAY SEFER,Hamley Ian,Guler Mustafa O.,Tekinay Ayse B.}, title = {Supramolecular Peptide Nanofiber Morphology Affects Mechanotransduction of Stem Cells}, journal = {BIOMACROMOLECULES}, year = 2017, number = 10, pages = {3114-3130}, month = 1, volume = 18 }

@article{article, author = {Koc Meryem Hatip,Ciftci Goksu Cinar,BADAY SEFER,Castelletto Valeria,Hamley Ian W.,Guler Mustafa O.}, title = {Hierarchical Self-Assembly of Histidine-Functionalized Peptide Amphiphiles into Supramolecular Chiral Nanostructures}, journal = {LANGMUIR}, year = 2017, number = 32, pages = {7947-7956}, month = 1, volume = 33 }

@article{article, author = {Koegel Sally,Mieulet Delphine,BADAY SEFER,Chatagnier Odile,Lehmann Moritz F.,Wiemken Andres,Boller Thomas,Wipf Daniel,Berneche Simon,Guiderdoni Emmanuel,Courty Pierre-Emmanuel}, title = {Phylogenetic, structural, and functional characterization of AMT31, an ammonium transporter induced by mycorrhization among model grasses}, journal = {MYCORRHIZA}, year = 2017, number = 7, pages = {695-708}, month = 1, volume = 27 }

@article{article, author = {Mohan Chakrabhavi Dhananjaya,Srinivasa V,Rangappa Shobith,Mervin Lewis,Mohan Surender,Paricharak, Shardul,BADAY SEFER,Li Feng,Chinnathambi Arunachalam,Zayed M E,Alharbi Sulaiman Ali,Bender Andreas,Sethi Gautam,Basappa Salundi,Rangappa Kanchugarakoppal S}, title = {Trisubstituted Imidazoles Induce Apoptosis in Human Breast Cancer Cells by Targeting the Oncogenic PI3K Akt mTOR Signaling Pathway}, journal = {PLoS One}, year = 2016, month = 4 }

@article{article, author = {Sauer Maximilian M,Jakob Roman P,Eras Jonathan,BADAY SEFER,Eris Deniz,Navarra Giulio,Berneche Simon,Ernst Beat,Maier Timm,Glockshuber Rudi}, title = {Catch bond mechanism of the bacterial adhesin FimH}, journal = {Nature Communications}, year = 2016, number = 10738, month = 3, volume = 7 }

@article{article, author = {BADAY SEFER,Orabi Esam A,Wang Shihao ,Lamoureux Guillaume,Berneche Simon}, title = {Mechanism of NH 4 + Recruitment and NH 3 Transport in Rh Proteins}, journal = {Structure}, year = 2015, pages = {1550-1557}, month = 8, volume = 23 }

@article{article, author = {Ramming Thomas,Okumura Masaki,Kanemura Shingo,BADAY SEFER,Birk Julia,Moes Suzette,Spiess Martin,Jenö Paul,Berneche Simon,Inaba Kenji,AppenzellerHerzog Christian}, title = {A PDI-catalyzed thiol–disulfide switch regulates the production of hydrogen peroxide by human Ero1}, journal = {Free Radical Biology and Medicine}, year = 2015, pages = {361-372}, month = 6, volume = 83 }

@article{article, author = {Demirci Erhan,Junne Tina,BADAY SEFER,Berneche Simon,Spiess Martin}, title = {Functional asymmetry within the Sec61p translocon}, journal = {Proceedings of the National Academy of Sciences}, year = 2013, number = 47, pages = {18856-18861}, month = 11, volume = 110 }

@article{article, author = {BADAY SEFER,Wang Shihao,Lamoureux Guillaume,Berneche Simon}, title = {Different Hydration Patterns in the Pores of AmtB and RhCG Could Determine Their Transport Mechanisms}, journal = {Biochemistry}, year = 2013, number = 49, pages = {7091-7098}, month = 9, volume = 52 }

@article{article, author = {Wang Shihao,Orabi ESAM A,BADAY SEFER,Berneche Simon,Lamoureux Guillaume}, title = {Ammonium Transporters Achieve Charge Transfer by Fragmenting Their Substrate}, journal = {Journal of the American Chemical Society}, year = 2012, number = 25, pages = {10419-10427}, month = 6, volume = 134 }

@article{article, author = {Lamoureux Guillaume,Javelle Arnaud,BADAY SEFER,Wang Shihao,Berneche Simon}, title = {Transport mechanisms in the ammonium transporter family}, journal = {Transfusion Clinique et Biologique}, year = 2010, month = 7 }

@article{article, author = {BADAY SEFER,ARKUN ZİYA YAMAN,ERMAN BURAK}, title = {Determination of pair-wise inter-residue interaction forces from folding pathways and their implementation in coarse-grained folding prediction}, journal = {Physical Chemistry Chemical Physics}, year = 2009, month = 1, volume = 11 }

@article{article, author = {Şentürk Şerife,BADAY SEFER,ARKUN ZİYA YAMAN,ERMAN BURAK}, title = {Optimum folding pathways for growing protein chains}, journal = {Physical Biology}, year = 2007, pages = {305-316}, month = 11, volume = 4 }