A multi-spectral myelin annotation tool for machine learning based myelin quantification
F1000 Research Ltd, Vol. 9, Kasım 2023, ISSN: 2046-1402
ÇAPAR ABDULKERİM, ÇİMEN SİBEL, ALADAG ZEYNEP, EKİNCİ DURSUN ALİ, AYTEN UMUT ENGİN, KERMAN BİLAL ERSEN, TÖREYİN BEHÇET UĞUR
@article{article,
author = {ÇAPAR ABDULKERİM, ÇİMEN SİBEL, Aladag Zeynep, Ekinci Dursun Ali, AYTEN UMUT ENGİN, KERMAN BİLAL ERSEN, TÖREYİN BEHÇET UĞUR},
title = {A multi-spectral myelin annotation tool for machine learning based myelin quantification},
journal = {F1000 Research Ltd},
year = 2023,
month = 11,
volume = 9
}
|
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Combined segmentation and classification-based approach to automated analysis of biomedical signals obtained from calcium imaging
Public Library of Science (PLoS), Vol. 18, Ocak 2023, ISSN: 1932-6203
DURSUN DEMİR GİZEM, DUNJA BİJELİC, AYŞİT NEŞE, KURT VATANDAŞLAR BURCU, RADENOVİC LİDİJA, ÇAPAR ABDULKERİM, KERMAN BİLAL ERSEN, PAVLE R ANDJUS, KORENİC ANDREJ, ÖZKAYA UFUK
@article{article,
author = {DURSUN DEMİR GİZEM, Dunja Bijelic, AYŞİT NEŞE, Kurt Vatandaşlar Burcu, Radenovic Lidija, ÇAPAR ABDULKERİM, KERMAN BİLAL ERSEN, Pavle R Andjus, Korenic Andrej, ÖZKAYA UFUK},
title = {Combined segmentation and classification-based approach to automated analysis of biomedical signals obtained from calcium imaging},
journal = {Public Library of Science (PLoS)},
year = 2023,
month = 1,
volume = 18
}
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Classification of Cervical Precursor Lesions via Local Histogram and Cell Morphometric Features
IEEE Journal of Biomedical and Health Informatics, Ocak 2022, ISSN: 2168-2194
ÇAPAR ABDULKERİM, ÇALIK NURULLAH, TÖREYİN BEHÇET UĞUR, BİLGİN GÖKHAN, ALBAYRAK ABDÜLKADİR, DURAK ATA LÜTFİYE, TÜRKMEN İLKNUR, MÜEZZİNOĞLU BAHAR, ÜNLÜ AKHAN ASLI
@article{article,
author = {ÇAPAR ABDULKERİM, ÇALIK NURULLAH, TÖREYİN BEHÇET UĞUR, BİLGİN GÖKHAN, ALBAYRAK ABDÜLKADİR, DURAK ATA LÜTFİYE, TÜRKMEN İLKNUR, MÜEZZİNOĞLU BAHAR, Ünlü Akhan Aslı},
title = {Classification of Cervical Precursor Lesions via Local Histogram and Cell Morphometric Features},
journal = {IEEE Journal of Biomedical and Health Informatics},
year = 2022,
month = 1
}
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A whole-slide image grading benchmark and tissue classification for cervical cancer precursor lesions with inter-observer variability
Medical & Biological Engineering & Computing, Vol. 59, Ağustos 2021, s. 1545-1561, ISSN: 0140-0118
ALBAYRAK ABDÜLKADİR, ÜNLÜ AKHAN ASLI, ÇALIK NURULLAH, ÇAPAR ABDULKERİM, BİLGİN GÖKHAN, TÖREYİN BEHÇET UĞUR, MÜEZZİNOĞLU BAHAR, TÜRKMEN İLKNUR, DURAK ATA LÜTFİYE
@article{article,
author = {ALBAYRAK ABDÜLKADİR, ÜNLÜ AKHAN ASLI, ÇALIK NURULLAH, ÇAPAR ABDULKERİM, BİLGİN GÖKHAN, TÖREYİN BEHÇET UĞUR, MÜEZZİNOĞLU BAHAR, TÜRKMEN İLKNUR, DURAK ATA LÜTFİYE},
title = {A whole-slide image grading benchmark and tissue classification for cervical cancer precursor lesions with inter-observer variability},
journal = {Medical & Biological Engineering & Computing},
year = 2021,
pages = {1545-1561},
month = 8,
volume = 59
}
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Automated scoring of CerbB2/HER2 receptors using histogram based analysis of immunohistochemistry breast cancer tissue images
Elsevier BV, Vol. 69, Ağustos 2021, ISSN: 1746-8094
KABAKÇI KAAN AYKUT, ÇAPAR ABDULKERİM, ÇAKIR ASLI, TÖREYİN BEHÇET UĞUR, TÜRKMEN İLKNUR
@article{article,
author = {Kabakçı Kaan Aykut, ÇAPAR ABDULKERİM, ÇAKIR ASLI, TÖREYİN BEHÇET UĞUR, TÜRKMEN İLKNUR},
title = {Automated scoring of CerbB2/HER2 receptors using histogram based analysis of immunohistochemistry breast cancer tissue images},
journal = {Elsevier BV},
year = 2021,
month = 8,
volume = 69
}
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Myelin detection in fluorescence microscopy images using machine learning
JOURNAL OF NEUROSCIENCE METHODS, Vol. 346, Aralık 2020, s. 108946, ISSN: 0165-0270
ÇİMEN YETİŞ SİBEL,ÇAPAR ABDULKERİM,EKİNCİ DURSUN ALİ,AYTEN UMUT ENGİN,KERMAN BİLAL ERSEN,TÖREYİN BEHÇET UĞUR
@article{article,
author = {ÇİMEN YETİŞ SİBEL,ÇAPAR ABDULKERİM,Ekinci Dursun Ali,AYTEN UMUT ENGİN,KERMAN BİLAL ERSEN,TÖREYİN BEHÇET UĞUR},
title = {Myelin detection in fluorescence microscopy images using machine learning},
journal = {JOURNAL OF NEUROSCIENCE METHODS},
year = 2020,
pages = {108946},
month = 12,
volume = 346
}
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Can Artificial Intelligence Help Cervical Cytopathologist to Detect High-Grade Squamous Intraepithelial Lesions on the Atrophic Background?
European Congress on Digital Pathology (ECDP2020), 12 Mayıs 2020
TÜRKMEN İLKNUR, DURSUN GİZEM, ÖZKAYA UFUK, ÇAPAR ABDULKERİM, MÜEZZİNOĞLU BAHAR, TÖREYİN BEHÇET UĞUR
@inproceedings{inproceedings,
author = {TÜRKMEN İLKNUR, DURSUN GİZEM, ÖZKAYA UFUK, ÇAPAR ABDULKERİM, MÜEZZİNOĞLU BAHAR, TÖREYİN BEHÇET UĞUR},
title = {Can Artificial Intelligence Help Cervical Cytopathologist to Detect High-Grade Squamous Intraepithelial Lesions on the Atrophic Background?},
year = 2020,
month = 5
}
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Detection Methods of Salient Regions in Super-Resolution Based on Sparse Representation
2019 Medical Technologies Congress (TIPTEKNO), İzmir/TÜRKİYE, 3 Ekim 2019, s. 1-4, ISSN: 2687-7783
BERK ÖMER,ÖZDEMİR GÜLCİHAN,TÖREYİN BEHÇET UĞUR,ÇAPAR ABDULKERİM
@inproceedings{inproceedings,
author = {Berk Ömer,ÖZDEMİR GÜLCİHAN,TÖREYİN BEHÇET UĞUR,ÇAPAR ABDULKERİM},
title = {Detection Methods of Salient Regions in Super-Resolution Based on Sparse Representation},
year = 2019,
pages = {1-4},
month = 10
}
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Myelin Segmentation in Fluorescence Microscopy Images
2019 Medical Technologies Congress (TIPTEKNO), Izmir, Turkey/TÜRKİYE, 3 Ekim 2019
ÇİMEN YETİŞ SİBEL,EKİNCİ DURSUN ALİ,ÇAKIR ERTAN,EKŞİOĞLU ENDER METE,AYTEN UMUT ENGİN,ÇAPAR ABDULKERİM,TÖREYİN BEHÇET UĞUR,KERMAN BİLAL ERSEN
@inproceedings{inproceedings,
author = {Çimen Yetiş Sibel,Ekinci Dursun Ali,Çakır Ertan,EKŞİOĞLU ENDER METE,AYTEN UMUT ENGİN,ÇAPAR ABDULKERİM,TÖREYİN BEHÇET UĞUR,KERMAN BİLAL ERSEN},
title = {Myelin Segmentation in Fluorescence Microscopy Images},
year = 2019,
month = 10
}
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DEVELOPMENT OF AUTOMATED ANALYSIS OF BIOMEDICALSIGNALS OBTAINED FROM CALCIUM IMAGING
JOINT 12th EBSA congress10th ICBP – IUPAP congress, 20 Temmuz 2019
DURSUN GİZEM,ÇAPAR ABDULKERİM,ÖZKAYA UFUK,KERMAN BİLAL ERSEN,KORENİC ANDREJ,DUNJA BİJELİC,RADENOVİC LİDİJA,PAVLE R ANDJUS
@inproceedings{inproceedings,
author = {DURSUN GİZEM,ÇAPAR ABDULKERİM,ÖZKAYA UFUK,KERMAN BİLAL ERSEN,Korenic Andrej,Dunja Bijelic,Radenovic Lidija,Pavle R Andjus},
title = {DEVELOPMENT OF AUTOMATED ANALYSIS OF BIOMEDICALSIGNALS OBTAINED FROM CALCIUM IMAGING},
year = 2019,
month = 7
}
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TIME LAPSE IGG-INDUCED CALCIUM SIGNALING ANALYSIS FOR ALS DIAGNOSIS
FENS Regional Meeting Belgrade, 10 Temmuz 2019
ÇAPAR ABDULKERİM,DURSUN GİZEM,KERMAN BİLAL ERSEN,KORENİC ANDREJ,DUNJA BİJELİC,RADENOVİC LİDİJA,PAVLE R ANDJUS
@inproceedings{inproceedings,
author = {ÇAPAR ABDULKERİM,DURSUN GİZEM,KERMAN BİLAL ERSEN,Korenic Andrej,Dunja Bijelic,Radenovic Lidija,Pavle R Andjus},
title = {TIME LAPSE IGG-INDUCED CALCIUM SIGNALING ANALYSIS FOR ALS DIAGNOSIS},
year = 2019,
month = 7
}
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Metaphase finding with deep convolutional neural networks
Biomedical Signal Processing and Control, Vol. 52, Temmuz 2019, s. 353-361, ISSN: 1746-8094
MOAZZEN YASER,ÇAPAR ABDULKERİM,ALBAYRAK ABDÜLKADİR,ÇALIK NURULLAH,TÖREYİN BEHÇET UĞUR
@article{article,
author = {Moazzen Yaser,ÇAPAR ABDULKERİM,ALBAYRAK ABDÜLKADİR,ÇALIK NURULLAH,TÖREYİN BEHÇET UĞUR},
title = {Metaphase finding with deep convolutional neural networks},
journal = {Biomedical Signal Processing and Control},
year = 2019,
pages = {353-361},
month = 7,
volume = 52
}
|
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Machine Learning Based Myelin Detection on Fluorescence Images
The 3rd NEUBIAS Conference, 2 Şubat 2019
ÇİMEN YETİŞ SİBEL, ÇAPAR ABDULKERİM, EKİNCİ DURSUN ALİ, AYTEN UMUT ENGİN, KERMAN BİLAL ERSEN, TÖREYİN BEHÇET UĞUR
@inproceedings{inproceedings,
author = {ÇİMEN YETİŞ SİBEL, ÇAPAR ABDULKERİM, Ekinci Dursun Ali, AYTEN UMUT ENGİN, KERMAN BİLAL ERSEN, TÖREYİN BEHÇET UĞUR},
title = {Machine Learning Based Myelin Detection on Fluorescence Images},
year = 2019,
month = 2
}
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DeepMQ: A Deep Learning Approach Based Myelin Quantification in Microscopic Fluorescence Images
2018 26th European Signal Processing Conference (EUSIPCO), 3 Eylül 2018
ÇAPAR ABDULKERİM,ÇİMEN YETİŞ SİBEL,TÖREYİN BEHÇET UĞUR,KERMAN BİLAL ERSEN
@inproceedings{inproceedings,
author = {ÇAPAR ABDULKERİM,Çimen Yetiş Sibel,TÖREYİN BEHÇET UĞUR,KERMAN BİLAL ERSEN},
title = {DeepMQ: A Deep Learning Approach Based Myelin Quantification in Microscopic Fluorescence Images},
year = 2018,
month = 9
}
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Karaciğer Yağlanma Oranı Tespitinde Dijital Patolojinin Katkısı
Gazi Medical Journal, Vol. 29, No. 3, Temmuz 2018, s. 179-182, ISSN: 21472092
ÇAKIR ASLI,TÜRKMEN İLKNUR,SAKA BURCU,AKHAN ASLI,ÇAPAR ABDULKERİM
@article{article,
author = {ÇAKIR ASLI,TÜRKMEN İLKNUR,SAKA BURCU,AKHAN ASLI,ÇAPAR ABDULKERİM},
title = {Karaciğer Yağlanma Oranı Tespitinde Dijital Patolojinin Katkısı},
journal = {Gazi Medical Journal},
year = 2018,
number = 3,
pages = {179-182},
month = 7,
volume = 29
}
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Gradient-based shape descriptors
Machine Vision and Applications, Vol. 20, No. 6, Ekim 2009, s. 365-378, ISSN: 0932-8092
ÇAPAR ABDULKERİM,GÖKMEN MUHİTTİN,KURT BİNNUR
@article{article,
author = {ÇAPAR ABDULKERİM,GÖKMEN MUHİTTİN,Kurt Binnur},
title = {Gradient-based shape descriptors},
journal = {Machine Vision and Applications},
year = 2009,
number = 6,
pages = {365-378},
month = 10,
volume = 20
}
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