@article{article, author = {YÜCE MERVE, SARICA ZEHRA, ATEŞ BERİL, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Exploring species-specific inhibitors with multiple target sites on S. aureus pyruvate kinase using a computational workflow}, journal = {Journal of Biomolecular Structure and Dynamics}, year = 2023, number = 8, pages = {3496-3510}, month = 5, volume = 41 }

@inproceedings{inproceedings, author = {KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, İNAN TUĞÇE, YÜCE MERVE, ATEŞ BERİL, SARICA ZEHRA}, title = {Using residue interaction networks to explore novel drug target sites on protein structures of antibiotic-resistant species: ribosome complex and glycolytic enzymes}, year = 2022, month = 9 }

@article{article, author = {KOCAAGA BANU, GÜNER FATMA SENİHA, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Molecular dynamics simulations can predict the optimum drug loading amount in pectin hydrogels for controlled release}, journal = {Materials Today Communications}, year = 2022, month = 6, volume = 31 }

@article{article, author = {KOCAAGA BANU, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, TATLIER MELKON, DİNLER DOĞANAY GİZEM, BATIREL SAİME, GÜNER FATMA SENİHA}, title = {Pectin–Zeolite-Based Wound Dressings with Controlled Albumin Release}, journal = {POLYMERS}, year = 2022, number = 3, month = 1, volume = 14 }

@article{article, author = {Çelebi Metehan, İNAN TUĞÇE, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, AKTEN EBRU DEMET}, title = {Potential allosteric sites captured in glycolytic enzymes via residue-based network models: Phosphofructokinase, glyceraldehyde-3-phosphate dehydrogenase and pyruvate kinase}, journal = {Biophysical Chemistry}, year = 2022, month = 1, volume = 280 }

@inproceedings{inproceedings, author = {YÜCE MERVE, SARICA ZEHRA, ATEŞ BERİL, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Drug repurposing for the S. aureus pyruvate kinase allosteric sites}, year = 2021, month = 10 }

@inproceedings{inproceedings, author = {YÜCE MERVE, GÜZEL PELİN, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Coarse-Grained Techniques to Explore Allosteric Signaling at Nascent Peptide Tunnel}, year = 2021, month = 8 }

@inproceedings{inproceedings, author = {İNAN TUĞÇE, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Identification of Allosteric Drug Binding Sites in Different Protein Structures with Gaussian Network Model and Residue Network Model}, year = 2021, month = 8 }

@inproceedings{inproceedings, author = {Kocaağa Banu, GÜNER FATMA SENİHA, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Using Molecular Dynamics Simulations to Predict the Optimum Drug Concentration in Pectin Hydrogels with Controlled Release}, year = 2021, month = 3 }

@inproceedings{inproceedings, author = {güner özde zeynep, AYDIN BUĞÇE, Karaoğlu İsmail Can, Bozoğlu Serdar, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, YAVUZ NİLGÜN, GÜNER FATMA SENİHA}, title = {Mitoxantrone-loaded magnetic single walled carbon nanotubes as nanocarriers for cancer treatment}, year = 2021, month = 3 }

@article{article, author = {güner özde zeynep,KOCAAGA BANU,BATIREL SAİME,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,GÜNER FATMA SENİHA}, title = {2-Thiobarbituric acid addition improves structural integrity and controlled drug delivery of biocompatible pectin hydrogels}, journal = {International Journal of Polymeric Materials and Polymeric Biomaterials}, year = 2021, pages = {1-9}, month = 1 }

@article{article, author = {AYVAZ KÖROĞLU MERVE, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, SUNGUR FETHİYE AYLİN}, title = {Monte Carlo and Molecular Dynamics Simulations suggest controlled release of corticosteroids from mesoporous host MIL-101 (Cr)}, journal = {Molecular Simulation}, year = 2021, month = 1, volume = 47 }

@article{article, author = {GÜVENSOY AYSA, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Computational assessment of thermostability in miRNA:CNT system using molecular dynamics simulations}, journal = {Biochimica et Biophysica Acta (BBA) - General Subjects}, year = 2021, month = 1, volume = 1865 }

@article{article, author = {Yeniyurt Yeşim, Kılıç Sıla, güner özde zeynep, Bozoğlu Serdar, Meran Mehdi, BAYSAK ELİF, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, HIZAL GÜRKAN, YAVUZ NİLGÜN, BATIREL SAİME, GÜNER FATMA SENİHA}, title = {Fmoc-PEG Coated Single-Wall Carbon Nanotube Carriers by Non-covalent Functionalization: An Experimental and Molecular Dynamics Study}, journal = {Frontiers in Bioengineering and Biotechnology}, year = 2021, month = 1, volume = 9 }

@article{article, author = {İNAN TUĞÇE, Dalgakıran Dilek, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, GÜNER FATMA SENİHA}, title = {Elucidating doxycycline loading and release performance of imprinted hydrogels with different cross-linker concentrations: a computational and experimental study}, journal = {Journal of Polymer Research}, year = 2021, month = 1, volume = 28 }

@article{article, author = {YÜCE MERVE, Çiçek Erdem, Dağ Aslıhan Başak, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, SUNGUR FETHİYE AYLİN}, title = {Repurposing of FDA-approved drugs against active site and potential allosteric drug-binding sites of COVID-19 main protease}, journal = {PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS}, year = 2021, number = 11, pages = {1425-1441}, month = 1, volume = 89 }

@book{book, author = {GÜZEL PELİN, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Kaba Ölçekli Elastik Ağyapı Modelleri ve Bakteriyel Ribozomun Yapı-İşlev İlişkisi}, booktitle = {Protein: Yapısı, Mühendisliği, Etkileşimleri, Dinamiği ve İlaç Tasarımındaki Yeri}, year = 2021, pages = {259-271}, publisher = {Ankara Nobel Tıp Yayınevi} }

@article{article, author = {KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,Gunes M Unal,HALİLOĞLU TÜRKAN}, title = {Local and Global Motions Underlying Antibiotic Binding in Bacterial Ribosome}, journal = {Journal of Chemical Information and Modeling}, year = 2020, number = 12, pages = {6447-6461}, month = 12, volume = 60 }

@inproceedings{inproceedings, author = {İNAN TUĞÇE, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Exploring allosteric mechanisms of CXCR4 and implications in drug design}, year = 2020, month = 10 }

@inproceedings{inproceedings, author = {YÜCE MERVE, GÜZEL PELİN, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Coupled dynamics around the ribosomal tunnel focusing on macrolide discrimination}, year = 2020, month = 10 }

@article{article, author = {GÜZEL PELİN,YILDIRIM HATİCE ZEYNEP,YÜCE MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model}, journal = {Frontiers in Molecular Biosciences}, year = 2020, month = 9, volume = 7 }

@inproceedings{inproceedings, author = {KOCAAGA BANU, TATLIER MELKON, GÜNER FATMA SENİHA, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Developing pectin-based hydrogels for controlled drug delivery: A computational and experimental study}, year = 2020, month = 3 }

@inproceedings{inproceedings, author = {İyisan Nergishan, Yıldırım Bora İrem, Kocaağa Banu, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, GÜNER FATMA SENİHA}, title = {Pektin ve Bor Bileşikleri İçeren Hidrojel Yara Örtüsü Tasarımı ve Prokain Salımı}, year = 2020, month = 3 }

@article{article, author = {AKKUS PELİN DENİZ,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Molecular dynamics simulations of adsorption of long pyrene-PEG chains on athin carbon nanotube}, journal = {TURKISH JOURNAL OF CHEMISTRY}, year = 2019, number = 4, pages = {1159-1169}, month = 8, volume = 43 }

@article{article, author = {KOCAAGA BANU,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,TATLIER MELKON,BATIREL SAİME,GÜNER FATMA SENİHA}, title = {Low‐methoxyl pectin–zeolite hydrogels controlling drug release promote in vitro wound healing}, journal = {JOURNAL OF APPLIED POLYMER SCIENCE}, year = 2019, number = 24, pages = {47640}, month = 3, volume = 136 }

@article{article, author = {DALGAKIRAN DİLEK,EROĞLU BÜŞRA,GÜNER FATMA SENİHA,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,İNAN TUĞÇE}, title = {A computational and experimental approach to develop minocycline-imprinted hydrogels and determination of their drug delivery performances}, journal = {Journal of Polymer Research}, year = 2018, number = 12, pages = {258}, month = 12, volume = 25 }

@inproceedings{inproceedings, author = {GÜZEL PELİN,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Coarse-Grained Approaches to Analyze RibosomalComplexes Dynamics: ENM and RedMD}, year = 2018, month = 10 }

@article{article, author = {KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Exploring Allosteric Communication in Multiple States of the Bacterial Ribosome Using Residue Network Analysis}, journal = {TURKISH JOURNAL OF BIOLOGY}, year = 2018, number = 5, pages = {392-404}, month = 10, volume = 42 }

@article{article, author = {ERKAL İLHAN SİBEL,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,İNAN TUĞÇE,güner özde zeynep,DALGAKIRAN DİLEK,okutan begüm,torun köse gamze,okçu heper aylin,gürses özlem,GÜNER FATMA SENİHA}, title = {Preparation and Determination of In Vivo and In Vitro Performance of Doxycycline Imprinted Contact Lenses for Corneal Neovascularization Treatment.}, journal = {Journal of the Turkish Chemical Society, Section A: Chemistry}, year = 2018, number = 3, pages = {1185-1192}, month = 10, volume = 5 }

@article{article, author = {MERAN MEHDİ PAVLOVİ,AKKUS PELİN DENİZ,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,BAYSAK ELİF,HIZAL GÜRKAN,Hacıosmanoglu Ebru,ÜNLÜ AYHAN,YAVUZ NİLGÜN,GÜNER FATMA SENİHA}, title = {Noncovalent Pyrene-Polyethylene Glycol Coatings of Carbon Nanotubes Achieve in Vitro Biocompatibility}, journal = {Langmuir}, year = 2018, number = 40, pages = {12071-12082}, month = 9, volume = 34 }

@inproceedings{inproceedings, author = {ERKAL İLHAN SİBEL,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,İNAN TUĞÇE,güner özde zeynep,OKUTAN BEGÜM,TORUN KÖSE GAMZE,KARABORK AYÇA,OKÇU HEPER AYLİN,gürses özlem,GÜNER FATMA SENİHA}, title = {Preparation of Doxycycline Imprinted Contact Lenses and Determination of Their In Vivo and In Vitro Performance in Treatment of Corneal Neovascularization}, year = 2018, month = 4 }

@inproceedings{inproceedings, author = {güner özde zeynep,KOCAAGA BANU,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,GÜNER FATMA SENİHA}, title = {2-Thiobarbitürik Asit ile Tiollendirilmiş Pektin Temelli İlaç Taşıyıcı Hidrojellerin Sentezi}, year = 2018, month = 4 }

@inproceedings{inproceedings, author = {KOCAAGA BANU,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,TATLIER MELKON,GÜNER FATMA SENİHA}, title = {Protein Loaded Pectin-Zeolite Wound Dressing Materials: Preparation, Characterization and Structural Analysis}, year = 2018, month = 4 }

@article{article, author = {HİLKAT KÜRKÇÜOĞLU SELİN SOFİ,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,GÜNER FATMA SENİHA}, title = {A Multiscale Investigation on Controlling Bovine Serum Albumin Adsorption onto Polyurethane Film}, journal = {JOURNAL OF APPLIED POLYMER SCIENCE}, year = 2018, number = 2, pages = {45669}, month = 1, volume = 135 }

@article{article, author = {GÜZEL PELİN,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE}, title = {Identification of Potential Allosteric Communication Pathways Between Functional Sites of the Bacterial Ribosome by Graph and Elastic Network Models}, journal = {Biochimica et Biophysica Acta (BBA) - General Subjects}, year = 2017, number = 12, pages = {3131-3141}, month = 12, volume = 1861 }

@article{article, author = {CAN MEHMET TARIK,KURKCUOGLU ZEYNEP,EZEROGLU GOKCE,UYAR ARZU,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,DORUKER TURGUT PEMRA}, title = {Conformational Dynamics of Bacterial Trigger Factor in Apo and Ribosome-Bound States}, journal = {PLOS ONE}, year = 2017, number = 4, pages = {176262}, month = 4, volume = 12 }

@inproceedings{inproceedings, author = {EROĞLU Büşra,DALGAKIRAN DİLEK,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,GÜNER FATMA SENİHA}, title = {Hesaplamalı ve Deneysel Yöntemler Kullanılarak Minosiklin ve Doksisiklin Baskılı Hidrojellerin Tasarlanması}, year = 2016, month = 8 }

@book{book, author = {KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,GÜNER FATMA SENİHA}, title = {Polyurethanes: Surface Protein Adsorption}, booktitle = {Encyclopedia of Biomedical Polymers and Polymeric Biomaterials}, year = 2015, pages = {6724-6742}, publisher = {Taylor Francis Group, LLC} }

@book{book, author = {KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,DORUKER TURGUT PEMRA}, title = {Coarse-Graining the Nano-Machine Ribosome to Elucidate its Functional Dynamics}, booktitle = {Ribosomes: Molecular Structure Role in Biological Functions and Implications for Genetic Diseases}, year = 2013, publisher = {Nova Science Publishers, Inc} }

@article{article, author = {UYAR ARZU,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,NILSSON LENNART,DORUKER TURGUT PEMRA}, title = {The Elastic Network Model Reveals a Consistent Picture on Intrinsic Functional Dynamics of Type II Restriction Endonucleases}, journal = {Physical Biology}, year = 2011, number = 5, pages = {56001}, month = 10, volume = 8 }

@article{article, author = {KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,BATES PAUL A}, title = {Mechanism of Cohesin Loading onto Chromosomes A Conformational Dynamics Study}, journal = {Biophysical Journal}, year = 2010, number = 4, pages = {1212-1220}, month = 8, volume = 99 }

@article{article, author = {KÜRKÇÜOĞLU AYŞE ÖZGE,TURGUT OSMAN TEOMAN,Cansu Sertan,JERNIGAN ROBERT L,DORUKER TURGUT PEMRA}, title = {Focused Functional Dynamics of Supramolecules by Use of a Mixed Resolution Elastic Network Model}, journal = {Biophysical Journal}, year = 2009, number = 4, pages = {1178-1187}, month = 8, volume = 97 }

@article{article, author = {KÜRKÇÜOĞLU AYŞE ÖZGE,KURKCUOGLU ZEYNEP,DORUKER TURGUT PEMRA,JERNIGAN ROBERT L}, title = {Collective Dynamics of the Ribosomal Tunnel Revealed by Elastic Network Modeling}, journal = {Proteins: Structure, Function, and Bioinformatics}, year = 2009, number = 4, pages = {837-845}, month = 6, volume = 75 }

@article{article, author = {KÜRKÇÜOĞLU AYŞE ÖZGE,DORUKER TURGUT PEMRA,SEN TANER Z,KLOCZKOWSKI ANDRZEJ ,JERNIGAN ROBERT L}, title = {The Ribosome Structure Controls and Directs mRNA Entry, Translocation and Exit Dynamics}, journal = {Physical Biology}, year = 2008, number = 4, pages = {46005}, month = 12, volume = 5 }

@book{book, author = {JERNIGAN ROBERT L,YANG LEI,SONG G,KÜRKÇÜOĞLU AYŞE ÖZGE,DORUKER TURGUT PEMRA}, title = {Elastic Network Models of Coarse-Grained Proteins are Effective for Studying the Structural Control Exerted over their Dynamics}, booktitle = {Coarse Graining of Condensed Phase and Biomolecular Systems}, year = 2008, publisher = {Taylor Francis Group, LLC} }

@article{article, author = {DORUKER TURGUT PEMRA,NILSSON LENNART,KÜRKÇÜOĞLU AYŞE ÖZGE}, title = {Collective Dynamics of Eco-RI DNA Complex by Elastic Network Model and Molecular Dynamics Simulations}, journal = {Journal of Biomolecular Structure and Dynamics}, year = 2006, number = 1, pages = {1-15}, month = 8, volume = 24 }

@article{article, author = {KÜRKÇÜOĞLU AYŞE ÖZGE,JERNIGAN ROBERT L,DORUKER TURGUT PEMRA}, title = {Loop Motions of Triosephosphate Isomerase Observed with Elastic Networks}, journal = {Biochemistry}, year = 2006, number = 4, pages = {1173-1182}, month = 1, volume = 45 }

@article{article, author = {KÜRKÇÜOĞLU AYŞE ÖZGE,JERNIGAN ROBERT L,DORUKER TURGUT PEMRA}, title = {Collective Dynamics of Large Proteins from Mixed Coarse Grained Elastic Network Model}, journal = {QSAR Combinatorial Science}, year = 2005, number = 4, pages = {443-448}, month = 6, volume = 24 }

@article{article, author = {KÜRKÇÜOĞLU AYŞE ÖZGE,JERNIGAN ROBERT L,DORUKER TURGUT PEMRA}, title = {Mixed Levels of Coarse Graining of Large Proteins Using Elastic Network Model Succeeds in Extracting the Slowest Motions}, journal = {Polymer}, year = 2004, number = 2, pages = {649-657}, month = 1, volume = 45 }