Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model
Frontiers in Molecular Biosciences, Vol. 7, Eylül 2020, ISSN: 2296-889X
GÜZEL PELİN,YILDIRIM HATİCE ZEYNEP,YÜCE MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
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Molecular dynamics simulations can predict the optimum drug loading amount in pectin hydrogels for controlled release
Materials Today Communications, Vol. 31, Ocak 2022, ISSN: 2352-4928
KOCAAĞA AYŞE BANU, GÜNER FATMA SENİHA, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
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Investigation of Surfactant-Membrane Interaction Using Molecular Dynamics Simulation with Umbrella Sampling
ACS ES&T Engineering, Vol. 1, No. 10, Ekim 2021, s. 1470-1480, ISSN: 2690-0645
MA YUNQİAO, VELİOĞLU SADİYE, TRİNH THEİN AN, WANG RONG, JİA WEİ CHEW
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Simulation of H2/CH4 mixture permeation through MOF membranes using non-equilibrium molecular dynamics
Journal of Materials Chemistry A, Vol. 7, No. 5, Ocak 2019, s. 2301-2314, ISSN: 2050-7488
VELİOĞLU SADİYE,KESKİN AVCI SEDA
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Fmoc-PEG Coated Single-Wall Carbon Nanotube Carriers by Non-covalent Functionalization: An Experimental and Molecular Dynamics Study
Frontiers in Bioengineering and Biotechnology, Vol. 9, Ocak 2021, ISSN: 2296-4185
YENİYURT YEŞİM, KİLİC SİLA, GÜNER Ö. ZEYNEP, BOZOGLU SERDAR, MERAN MEHDİ, BAYSAK ELİF, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, HIZAL GÜRKAN, YAVUZ NİLGÜN, BATIREL SAİME, GÜNER FATMA SENİHA
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Controlled Release of Anti-Inflammatory Drugs from Mesoporous Drug Host MIL-101 (Cr), Effect of Framework Flexibility in Molecular Dynamics Simulations
22nd European Symposium on Quantitative Structure-Activity Relationships (EuroQSAR 2018), 16 Eylül 2018
AYVAZ KÖROĞLU MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,SUNGUR FETHİYE AYLİN
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Molecular dynamics simulation of size, temperature, heating and cooling rates on structural formation of Ag-Cu-Ni ternary nanoparticles (Ag34-Cu33-Ni33)
COMPUTATIONAL MATERIALS SCIENCE, Vol. 183, Ekim 2020, s. 109842, ISSN: 0927-0256
SAFALTIN ŞERZAT,GÜRMEN SEBAHATTİN
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Monte Carlo and Molecular Dynamics Simulations suggest controlled release of corticosteroids from mesoporous host MIL-101 (Cr)
Molecular Simulation, Vol. 47, Ocak 2021, ISSN: 0892-7022","1029-0435
AYVAZ KÖROĞLU MERVE, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, SUNGUR FETHİYE AYLİN
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Mechanical performance and morphological evolution of heat-treated nanoporous gold: A molecular dynamics study
PHYSICA E-LOW-DIMENSIONAL SYSTEMS NANOSTRUCTURES, Vol. 108, Nisan 2019, s. 15-21, ISSN: 1386-9477
ERTURK AHMET SEMİH,YILDIZ YUNUS ONUR,KIRCA MESUT
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Molecular dynamics investigation of membrane fouling in organic solvents
Journal of Membrane Science, Vol. 632, Ocak 2021, s. 119329, ISSN: 0376-7388
MA YUNQİAO, VELİOĞLU SADİYE, YİN ZİQİANG, YİN ZİQİANG, WANG RONG, JİA WEİ CHEW
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Molecular dynamics simulations of apo holo and inactivator bound GABA at reveal the role of active site residues in PLP dependent enzymes
Proteins: Structure, Function, and Bioinformatics, Vol. 84, No. 7, Temmuz 2016, s. 875-891, ISSN: 08873585
GÖKCAN HATİCE,MONARD GERALD,SUNGUR FETHİYE AYLİN
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Structural investigation of vesnarinone at the pore domains of open and open-inactivated states of hERG1 K channel
JOURNAL OF MOLECULAR GRAPHICS MODELLING, Vol. 77, No. null, 2017, s. 399-412, ISSN: 1093-3263
KAYİK GULRU,TÜZÜN NURCAN,DURDAĞI SERDAR
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Phylogenetic, structural, and functional characterization of AMT31, an ammonium transporter induced by mycorrhization among model grasses
MYCORRHIZA, Vol. 27, No. 7, Ocak 2017, s. 695-708, ISSN: 0940-6360
KOEGEL SALLY,MİEULET DELPHİNE,BADAY SEFER,CHATAGNİER ODİLE,LEHMANN MORİTZ F.,WİEMKEN ANDRES,BOLLER THOMAS,WİPF DANİEL,BERNECHE SİMON,GUİDERDONİ EMMANUEL,COURTY PİERRE-EMMANUEL
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Mechanical characteristics and failure behavior of puckered and buckled allotropes of antimonene nanotubes: a molecular dynamics study
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, Vol. 25, Ocak 2023, ISSN: 1463-9076
ÇETİN MURAT, KIRCA MESUT
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Design and analysis of sandwiched fullerene graphene composites using molecular dynamics simulations
Composites Part B: Engineering, Vol. 79, Eylül 2015, s. 513-520, ISSN: 13598368
KIRCA MESUT
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Molecular dynamics simulations can predict the optimum drug loading amount in pectin hydrogels for controlled release
MATERIALS TODAY COMMUNICATIONS, Vol. 31, Şubat 2022, s. 1-11, ISSN: 2352-4928
KOCAAĞA AYŞE BANU,GÜNER FATMA SENİHA,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
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Using Molecular Dynamics Simulations to Predict the Optimum Drug Concentration in Pectin Hydrogels with Controlled Release
2021 Global Nanobiotechnology Consortium (GNC) E-Conference, 13 Mart 2021
KOCAAĞA BANU, GÜNER FATMA SENİHA, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
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Graphene oxide-based and porous nanocarriers for drug delivery developed with computational and experimental approaches
SURFACES AND INTERFACES, Vol. 76, Kasım 2025, s. 14, ISSN: 2468-0230
GÜNER-YILMAZ ZEYNEP,KOCAAĞA AYŞE BANU,YILMAZ ANIL,BALÇIK MARCEL,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,SUNGUR FETHİYE AYLİN,YAVUZ REHA,KARATEPE YAVUZ NİLGÜN,TATLIER MELKON,SİRKECİOĞLU AHMET,HOOSHMAND SARA,MİAVAGHİ MEHRAN ALİARİ,ZABARA MOHAMMED AHMED,YÜRÜM ALP,BAYAZIT MUSTAFA KEMAL,BATIREL SAİME,GÜNER FATMA SENİHA
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Design and molecular dynamics of multifunctional sulfonated poly(dimethylaminoethyl methacrylate)/mica hybrid cryogels through freezing-induced gelation
SOFT MATTER, Vol. 15, No. 35, Eylül 2019, s. 7043-7062, ISSN: 1744-683X
ÖKTEN BEŞLİ NUR SENA, KAYA BERİL, ORAKDÖĞEN NERMİN
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Inhibition of pancreatic cancer via LPAR4 receptor with a de novo drug complex design using theoretical organic chemistry: Comprehensive molecular docking, molecular dynamics
Journal of Research in Pharmacy, Vol. 28, No. 4, Ocak 2024, s. 1033-1040, ISSN: 2630-6344
AĞAR SOYKAN,ARASAN YAREN,AKKURT BARBAROS,ULUKAYA ENGİN
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