Molecular Mechanism of Protein Arginine Deiminase 2: A Study Involving Multiple Microsecond Long Molecular Dynamics Simulations
BIOCHEMISTRY, Ocak 2022, s. 12, ISSN: 0006-2960
ÇİÇEK ERDEM, MONARD GERALD, SUNGUR FETHİYE AYLİN
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Cytotoxic effects, carbonic anhydrase isoenzymes, α-glycosidase and acetylcholinesterase inhibitory properties, and molecular docking studies of heteroatom-containing sulfonyl hydrazone derivatives
Journal of Biomolecular Structure and Dynamics, Vol. 39, Ocak 2021, ISSN: 0739-1102
ÇELEBİOĞLU HASAN UFUK, ERDEN YAVUZ, HAMURCU FATMA, TASLIMI PARHAM, ŞENTÜRK OZAN SANLI, ÖZDEMİR ÖZMEN ÜMMÜHAN, TÜZÜN BURAK, GÜLÇİN İLHAMİ
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Molecular dynamics simulations of apo holo and inactivator bound GABA at reveal the role of active site residues in PLP dependent enzymes
Proteins: Structure, Function, and Bioinformatics, Vol. 84, No. 7, Temmuz 2016, s. 875-891, ISSN: 08873585
GÖKCAN HATİCE,MONARD GERALD,SUNGUR FETHİYE AYLİN
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Mechanical properties of fullerene embedded silicon nanowires
ARCHIVE OF APPLIED MECHANICS, Vol. 93, Nisan 2023, s. 355-367, ISSN: 0939-1533
ERBAŞ BERKE, YARDIM SARVEN, KIRCA MESUT
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Controlled Release of Anti-Inflammatory Drugs from Mesoporous Drug Host MIL-101 (Cr), Effect of Framework Flexibility in Molecular Dynamics Simulations
22nd European Symposium on Quantitative Structure-Activity Relationships (EuroQSAR 2018), 16 Eylül 2018
AYVAZ KÖROĞLU MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,SUNGUR FETHİYE AYLİN
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Structural investigation of vesnarinone at the pore domains of open and open-inactivated states of hERG1 K channel
JOURNAL OF MOLECULAR GRAPHICS MODELLING, Vol. 77, No. null, 2017, s. 399-412, ISSN: 1093-3263
KAYİK GULRU,TÜZÜN NURCAN,DURDAĞI SERDAR
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Inhibition of pancreatic cancer via LPAR4 receptor with a de novo drug complex design using theoretical organic chemistry: Comprehensive molecular docking, molecular dynamics
Journal of Research in Pharmacy, Vol. 28, No. 4, Ocak 2024, s. 1033-1040, ISSN: 2630-6344
AĞAR SOYKAN,ARASAN YAREN,AKKURT BARBAROS,ULUKAYA ENGİN
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Contact angle of montmorillonite basal surface as determined by experimental and molecular dynamics simulation
Balkan Mineral Processing Congress, 31 Ekim 2017
KARATAŞ DENİZ,HOJİYEV RUSTAM,ÇELİK MEHMET SABRİ
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Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model
Frontiers in Molecular Biosciences, Vol. 7, Eylül 2020, ISSN: 2296-889X
GÜZEL PELİN,YILDIRIM HATİCE ZEYNEP,YÜCE MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
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Supramolecular Peptide Nanofiber Morphology Affects Mechanotransduction of Stem Cells
BIOMACROMOLECULES, Vol. 18, No. 10, Ocak 2017, s. 3114-3130, ISSN: 1525-7797
ARSLAN ELİF,KOC MERYEM HATİP,UYSAL OZGE,DİKECOGLU BEGUM,TOPAL AHMET E.,GARİFULLİN RUSLAN,OZKAN ALPER D.,DANA AYKUTLU,HERMİDA-MERİNO DANİEL,CASTELLETTO VALERİA,EDWARDS-GAYLE CHARLOTTE,BADAY SEFER,HAMLEY IAN,GULER MUSTAFA O.,TEKİNAY AYSE B.
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On determining the thermal state of individual atoms in molecular dynamics simulations of nonequilibrium processes in solids
Chemical Physics Letters, Vol. 506, No. 4-6, Nisan 2011, s. 290-297, ISSN: 00092614
FU YAO,KIRCA MESUT,TO ALBERT CHIFU
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Investigation of Grain Size Effect on the Tensile Behavior of Nano-Crystalline Aluminum by Molecular Dynamics Simulations
International Conference on Physical Chemistry and Functional Materials (PCMF'18), Elazığ/TÜRKİYE, 19 Haziran 2018, s. 207-207
DEĞİRMENCİ ÜNAL,ERTÜRK AHMET SEMİH,YILDIZ YUNUS ONUR,KIRCA MESUT
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Mechanical properties of SWNT X Junctions through molecular dynamics simulation
International Journal of Smart and Nano Materials, Vol. 3, No. 1, Mart 2012, s. 33-46, ISSN: 1947-5411
STORMER B A,PIPER N M,YANG X M,TAO J,FU YAO,KIRCA MESUT,TO ALBERT C
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Mechanical characteristics and failure behavior of puckered and buckled allotropes of antimonene nanotubes: a molecular dynamics study
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, Vol. 25, Ocak 2023, ISSN: 1463-9076
ÇETİN MURAT, KIRCA MESUT
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Fmoc-PEG Coated Single-Wall Carbon Nanotube Carriers by Non-covalent Functionalization: An Experimental and Molecular Dynamics Study
Frontiers in Bioengineering and Biotechnology, Vol. 9, Ocak 2021, ISSN: 2296-4185
YENİYURT YEŞİM, KILIÇ SILA, GÜNER ÖZDE ZEYNEP, BOZOĞLU SERDAR, MERAN MEHDİ, BAYSAK ELİF, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, HIZAL GÜRKAN, YAVUZ NİLGÜN, BATIREL SAİME, GÜNER FATMA SENİHA
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Molecular dynamics simulation of size, temperature, heating and cooling rates on structural formation of Ag-Cu-Ni ternary nanoparticles (Ag34-Cu33-Ni33)
COMPUTATIONAL MATERIALS SCIENCE, Vol. 183, Ekim 2020, s. 109842, ISSN: 0927-0256
SAFALTIN ŞERZAT,GÜRMEN SEBAHATTİN
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Adsorption of dihalogen molecules on pristine graphene surface: Monte Carlo and molecular dynamics simulation studies
Journal of Molecular Modeling, Vol. 23, No. 5, Mayıs 2017, ISSN: 1610-2940
SÜTAY BERKAY,YURTSEVER MİNE
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Interaction of curcumin in a drug delivery system including a composite with poly(lactic-co-glycolic acid) and montmorillonite: a density functional theory and molecular dynamics study
J. Mater. Chem. B, Vol. 5, No. 40, Ocak 2017, s. 8070-8082, ISSN: 2050-750X
KARATAŞ DENİZ,TEKİN ADEM,BAHADORİ FATEMAH,ÇELİK MEHMET SABRİ
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Design and molecular dynamics of multifunctional sulfonated poly(dimethylaminoethyl methacrylate)/mica hybrid cryogels through freezing-induced gelation
SOFT MATTER, Vol. 15, No. 35, Eylül 2019, s. 7043-7062, ISSN: 1744-683X
ÖKTEN BEŞLİ NUR SENA, KAYA BERİL, ORAKDÖĞEN NERMİN
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Compression and shear behavior of ultrathin coated nanoporous gold: A molecular dynamics study
JOURNAL OF APPLIED PHYSICS, Vol. 124, No. 18, Kasım 2018, ISSN: 0021-8979
YILDIZ YUNUS ONUR,KIRCA MESUT
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