15th European Symposium on QSAR Molecular Modeling, En iyi poster ödülü
CADDD Society, 2004
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Investigation of the mechanisms of hERG1 blocker toxins as anti-cancer agent with molecular modeling techniques
Lisansüstü Eğitim Enstitüsü, İstanbul Teknik Üniversitesi, 2024
BERİL ÇOLAK GÜNAY
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In silico design of hERG non-blocker compounds with retained pharmacological activity using multi-scale molecular modeling applications
Fen Bilimleri Enstitüsü, İstanbul Teknik Üniversitesi, 2017
GÜLRU KAYIK
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Modeling the deamidation of asparagine residues via succinimide intermediates
Journal of Molecular Modeling, Vol. 7, Ocak 2002, s. 147-160, ISSN: 0948-5023
SUNGUR FETHİYE AYLİN,AVİYENTE VİKTORYA,ZAFER SEN TANER,BAHAR IVET
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Modeling of deacetylation reaction mechanism of o-acetylpeptidoglycan esterase with quantum cluster approach
INTERNATIONAL SYMPOSIUM ONCHEMISTRY ViA COMPUTATIONAPPLICATIONS ON MOLECULAR NANOSCIENCE, 30 Ekim 2017
AKSAKAL ZEYNEP,TATAROĞLU MUAMMER MELİN,SUNGUR FETHİYE AYLİN,TÜZÜN NURCAN
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Molecular modeling of metal organic frameworks for the controlled release of topical steroids
International Symposium on Chemstiry ViA Computation, 30 Ekim 2017
AYVAZ KÖROĞLU MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,SUNGUR FETHİYE AYLİN
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Modeling of deacetylation reaction mechanism of o-acetylpeptidoglycan esterase with quantum cluster approach
INTERNATIONAL SYMPOSIUM ONCHEMISTRY ViA COMPUTATIONAPPLICATIONS ON MOLECULAR NANOSCIENCE, 30 Ekim 2017
AKSAKAL ZEYNEP,TATAROĞLU MUAMMER MELİN,SUNGUR FETHİYE AYLİN,TÜZÜN NURCAN
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An In Silico Study On The Interactions Of PDE5 Inhibitors With Herg1 K Ion Channel Rehabilitating Sildenafil With Multi Scale Molecular Modeling Methods
BAU Drgug Design Congress, 1 Ekim 2015
GÜLRU KAYIK,TÜZÜN NURCAN,DURDAĞI SERDAR
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Identification of novel MDM2-p53 protein-protein interaction inhibitors with multidimensional molecular modeling approaches and application of binary QSAR models for prediction of therapeutic activity and toxic effects
International Symposium on Chemistry via Computation, İstanbul/TÜRKİYE, 30 Ekim 2017
AYDIN GÜLŞAH,YURTSEVER MİNE,DURDAĞI SERDAR
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Investigating the Effect of GLU283 Protonation State on the Conformational Heterogeneity of CCR5 by Molecular Dynamics Simulations
Journal of Chemical Information and Modeling, Vol. 64, Ekim 2024, ISSN: 1549-9596
DOĞAN BERNA,DURDAĞI SERDAR
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Design and synthesis of novel caffeic acid phenethyl ester (CAPE) derivatives and their biological activity studies in glioblastoma multiforme (GBM) cancer cell lines
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, Vol. 113, Haziran 2022, ISSN: 1093-3263
SUCU BİLGESU ONUR, KOÇ ELİF BEYZA, SAVLUĞ İPEK ÖZGECAN, MİRAT AFRANUR, ALMAS FURKAN, GÜZEL MELİKE AYBALA, DOĞAN BERNA, ULUDAĞ DAMLA, KARAKAŞ NİHAL, DURDAĞI SERDAR, GÜZEL MUSTAFA
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Investigation of supramolecular interaction of quercetin with N,N-dimethylamine-functionalized p-sulfonated calix[4,8]arenes using molecular modeling and their in vitro cytotoxic response towards selected cancer cells
NEW JOURNAL OF CHEMISTRY, Vol. 45, No. 39, Ekim 2021, s. 18443-18452, ISSN: 1144-0546
MEHMET OĞUZ, DOĞAN BERNA, DURDAĞI SERDAR, KARAKURT SERDAR, YILMAZ MUSTAFA
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Synthesis, biological activity and multiscale molecular modeling studies of bis-coumarins as selective carbonic anhydrase IX and XII inhibitors with effective cytotoxicity against hepatocellular carcinoma
BIOORGANIC CHEMISTRY, Vol. 87, Haziran 2019, s. 838-850, ISSN: 0045-2068
ZENGİN KURT BELMA,DAĞ AYDAN,DOĞAN BERNA,DURDAĞI SERDAR,ANGELİ ANDREA,NOCENTİNİ ALESSİO,SUPURAN CLAUDİU T,SÖNMEZ FATİH
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Applications of Molecular Modeling Approaches For The Identification of Novel Sars-Cov-2 Rdrp Inhibitors
2. Computer-Aided Drug Design Symposium and Workshop - Linking Design, Biology, Chemistry and Medicine, İstanbul/TÜRKİYE, 11 Mayıs 2022
DOĞAN BERNA, DURDAĞI SERDAR, MOTAPANYANE, NTSOAKİ BAİTHEDİ
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Optimization of CHARMM force field parameters for ryanodine receptor inhibitory drug dantrolene using FFTK and FFParam
Journal of Molecular Modeling, Vol. 30, No. 2, Ocak 2024, ISSN: 1610-2940
AKCAY SALİHA NUR,SAYLAN CEMİL CAN,TEKİN ADEM,BADAY SEFER
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Formation of the inclusion complex of water soluble fluorescent calix[4]arene and naringenin: solubility, cytotoxic effect and molecular modeling studies
Journal of Biomolecular Structure and Dynamics, Ekim 2019, s. 3801-3813, ISSN: 0739-1102
OGUZ MEHMET,BHATTİ ASİF ALİ,DOĞAN BERNA,KARAKURT SERDAR,DURDAGİ SERDAR,YİLMAZ MUSTAFA
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Optimization of CHARMM force field parameters for ryanodine receptor inhibitory drug dantrolene using FFTK and FFParam
Journal of Molecular Modeling, Vol. 30, Ocak 2024, ISSN: 1610-2940
AKCAY SALİHA NUR,SAYLAN CEMİL CAN,TEKİN ADEM,BADAY SEFER
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Genome-Scale Metabolic Modeling for Unraveling Molecular Mechanisms of High Threat Pathogens
Front. Cell Dev. Biol, Kasım 2020, ISSN: 2296-634X
SERTBAŞ MUSTAFA, ÜLGEN ŞEFİKA KUTLU
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Synthesis of a Novel and More Sustainable Cationic Bleach Activator,N-[4-(N,N,N)-Triethylammoniumchloride-butanoyl] Butyrolactam, for Cotton: Optimization and Theoretical Limitations
ACS SUSTAINABLE CHEMISTRY & ENGINEERING, Vol. 10, No. 14, Kasım 2022, ISSN: 2168-0485
YILDIRIM EROL,ALTAY PELİN,GÜRSOY NEVİN ÇİĞDEM,J. HAUSER PETER,EL-SHAFEİ AHMED
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Modeling gain-of-function and loss-of-function components of SPAST-based hereditary spastic paraplegia using transgenic mice
Human Molecular Genetics, Ocak 2022, ISSN: 0964-6906
PİERMARİNİ EMANUELA, AKARSU ŞEYMA, CONNORS THERESA, KNEUSSEL MATTHİAS, LANE MİCHAEL A., MORFİNİ GERARDO, KARABAY KORKMAZ ARZU, BAAS PETER W., QİANG LİANG
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