Using residue interaction networks to explore novel drug target sites on protein structures of antibiotic-resistant species: ribosome complex and glycolytic enzymes
IC2AR 2022: 5th International Caparica Conference in Antibiotic Resistance 2022, 5 Eylül 2022
KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, İNAN TUĞÇE, YÜCE MERVE, ATEŞ BERİL, SARICA ZEHRA
|
Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model
Frontiers in Molecular Biosciences, Vol. 7, Eylül 2020, ISSN: 2296-889X
GÜZEL PELİN,YILDIRIM HATİCE ZEYNEP,YÜCE MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
|
Coupled dynamics around the ribosomal tunnel focusing on macrolide discrimination
The International Symposium on Health Informatics and Bioinformatics HIBIT 2020, İstanbul/TÜRKİYE, 22 Ekim 2020
YÜCE MERVE, GÜZEL PELİN, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
|
Elastic Network Models of Coarse-Grained Proteins are Effective for Studying the Structural Control Exerted over their Dynamics Coarse Graining of Condensed Phase and Biomolecular Systems
2008, Taylor Francis Group, LLC
JERNIGAN ROBERT L,YANG LEI,SONG G,KÜRKÇÜOĞLU AYŞE ÖZGE,DORUKER TURGUT PEMRA
|
Coarse-Graining the Nano-Machine Ribosome to Elucidate its Functional Dynamics Ribosomes: Molecular Structure Role in Biological Functions and Implications for Genetic Diseases
2013, Nova Science Publishers, Inc
KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,DORUKER TURGUT PEMRA
|
Exploring allosteric mechanisms of CXCR4 and implications in drug design
The International Symposium on Health Informatics and Bioinformatics HIBIT 2020, İstanbul/TÜRKİYE, 22 Ekim 2020
İNAN TUĞÇE, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
|
Coupled dynamics around the ribosomal tunnel focusing on macrolide discrimination
The International Symposium on Health Informatics and Bioinformatics HIBIT 2020, İstanbul/TÜRKİYE, 22 Ekim 2020
YÜCE MERVE, GÜZEL PELİN, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
|
Mikrobiyal Biyopolimerler: Polihidroksialkanotların Biyoplastik Üretiminde Kullanımı Üzerine Genel Değerlendirme
Çevre Bilim ve Teknoloji, Kasım 2018, ISSN: 1302-5627
ÇOKGÖR EMİNE,PALA ÖZKÖK İLKE,GÜVEN DİĞDEM,ZENGİN BALCI GÜLSÜM EMEL,OKUTMAN TAŞ DİDEM,YAĞCI NEVİN,SAYI UÇAR NİLAY,ÖZYILDIZ GÖKŞİN,İNSEL HAYRETTİN GÜÇLÜ
|
Mikrobiyal Biyopolimerler: Polihidroksialkanotların Biyoplastik Üretiminde Kullanımı Üzerine Genel Değerlendirme
Çevre Bilim ve Teknoloji, Kasım 2018, ISSN: 1302-5627
ÇOKGÖR EMİNE,PALA ÖZKÖK İLKE,GÜVEN DİĞDEM,ZENGİN BALCI GÜLSÜM EMEL,OKUTMAN TAŞ DİDEM,YAĞCI NEVİN,SAYI UÇAR NİLAY,ÖZYILDIZ GÖKŞİN,İNSEL HAYRETTİN GÜÇLÜ
|
Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model
Frontiers in Molecular Biosciences, Vol. 7, Eylül 2020, ISSN: 2296-889X
GÜZEL PELİN,YILDIRIM HATİCE ZEYNEP,YÜCE MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
|
Local and Global Motions Underlying Antibiotic Binding in Bacterial Ribosome
Journal of Chemical Information and Modeling, Vol. 60, No. 12, Aralık 2020, s. 6447-6461, ISSN: 1549-9596
KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,GUNES M UNAL,HALİLOĞLU TÜRKAN
|
Collective Dynamics of the Ribosomal Tunnel Revealed by Elastic Network Modeling
Proteins: Structure, Function, and Bioinformatics, Vol. 75, No. 4, Haziran 2009, s. 837-845, ISSN: 08873585
KÜRKÇÜOĞLU AYŞE ÖZGE,KURKCUOGLU ZEYNEP,DORUKER TURGUT PEMRA,JERNIGAN ROBERT L
|
Focused Functional Dynamics of Supramolecules by Use of a Mixed Resolution Elastic Network Model
Biophysical Journal, Vol. 97, No. 4, Ağustos 2009, s. 1178-1187, ISSN: 00063495
KÜRKÇÜOĞLU AYŞE ÖZGE,TURGUT OSMAN TEOMAN,CANSU SERTAN,JERNIGAN ROBERT L,DORUKER TURGUT PEMRA
|
The Ribosome Structure Controls and Directs mRNA Entry, Translocation and Exit Dynamics
Physical Biology, Vol. 5, No. 4, Aralık 2008, s. 46005, ISSN: 1478-3975
KÜRKÇÜOĞLU AYŞE ÖZGE,DORUKER TURGUT PEMRA,SEN TANER Z,KLOCZKOWSKI ANDRZEJ ,JERNIGAN ROBERT L
|
Loop Motions of Triosephosphate Isomerase Observed with Elastic Networks
Biochemistry, Vol. 45, No. 4, Ocak 2006, s. 1173-1182, ISSN: 0006-2960
KÜRKÇÜOĞLU AYŞE ÖZGE,JERNIGAN ROBERT L,DORUKER TURGUT PEMRA
|
Collective Dynamics of Eco-RI DNA Complex by Elastic Network Model and Molecular Dynamics Simulations
Journal of Biomolecular Structure and Dynamics, Vol. 24, No. 1, Ağustos 2006, s. 1-15, ISSN: 0739-1102
DORUKER TURGUT PEMRA,NILSSON LENNART,KÜRKÇÜOĞLU AYŞE ÖZGE
|
Collective Dynamics of Large Proteins from Mixed Coarse Grained Elastic Network Model
QSAR Combinatorial Science, Vol. 24, No. 4, Haziran 2005, s. 443-448, ISSN: 1611-020X
KÜRKÇÜOĞLU AYŞE ÖZGE,JERNIGAN ROBERT L,DORUKER TURGUT PEMRA
|
Mixed Levels of Coarse Graining of Large Proteins Using Elastic Network Model Succeeds in Extracting the Slowest Motions
Polymer, Vol. 45, No. 2, Ocak 2004, s. 649-657, ISSN: 00323861
KÜRKÇÜOĞLU AYŞE ÖZGE,JERNIGAN ROBERT L,DORUKER TURGUT PEMRA
|
The Elastic Network Model Reveals a Consistent Picture on Intrinsic Functional Dynamics of Type II Restriction Endonucleases
Physical Biology, Vol. 8, No. 5, Ekim 2011, s. 56001, ISSN: 1478-3975
UYAR ARZU,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,NILSSON LENNART,DORUKER TURGUT PEMRA
|
Conformational Dynamics of Bacterial Trigger Factor in Apo and Ribosome-Bound States
PLOS ONE, Vol. 12, No. 4, Nisan 2017, s. 176262, ISSN: 1932-6203
CAN MEHMET TARIK,KURKCUOGLU ZEYNEP,EZEROGLU GOKCE,UYAR ARZU,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,DORUKER TURGUT PEMRA
|