Hydrogen Storage in Trimetallic Borohydrides: a Crystal Structure Prediction and Ab Initio Molecular Dynamics Simulations Study
American Chemical Society (ACS), Vol. 127, Eylül 2023, ISSN: 1932-7447
DEMİR SAMET, TORKASHVAND MOSTAFA, JOUYBAR SHİRZAD, NİKFARJAM ZAHRA, ZARGARİ FARSHİD, TAFRESHİ SAEEDEH SARABADANİ, TEKİN ADEM
|
Molecular dynamics simulations of adsorption of long pyrene-PEG chains on athin carbon nanotube
TURKISH JOURNAL OF CHEMISTRY, Vol. 43, No. 4, Ağustos 2019, s. 1159-1169, ISSN: 1300-0527
AKKUS PELİN DENİZ,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
|
Molecular Mechanism of Protein Arginine Deiminase 2: A Study Involving Multiple Microsecond Long Molecular Dynamics Simulations
BIOCHEMISTRY, Ocak 2022, s. 12, ISSN: 0006-2960
ÇİÇEK ERDEM, MONARD GERALD, SUNGUR FETHİYE AYLİN
|
Molecular dynamics simulations of apo holo and inactivator bound GABA at reveal the role of active site residues in PLP dependent enzymes
Proteins: Structure, Function, and Bioinformatics, Vol. 84, No. 7, Temmuz 2016, s. 875-891, ISSN: 08873585
GÖKCAN HATİCE,MONARD GERALD,SUNGUR FETHİYE AYLİN
|
Controlled Release of Anti-Inflammatory Drugs from Mesoporous Drug Host MIL-101 (Cr), Effect of Framework Flexibility in Molecular Dynamics Simulations
22nd European Symposium on Quantitative Structure-Activity Relationships (EuroQSAR 2018), 16 Eylül 2018
AYVAZ KÖROĞLU MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,SUNGUR FETHİYE AYLİN
|
Nanoporous gold reinforced with carbon based nanomaterials: A molecular dynamics study
COMPOSITES PART B-ENGINEERING, Vol. 151, No. null, Ekim 2018, s. 62-70, ISSN: 1359-8368
GÜLMEZ DENİZ EZGİ,YILDIZ YUNUS ONUR,KIRCA MESUT
|
Structural investigation of vesnarinone at the pore domains of open and open-inactivated states of hERG1 K channel
JOURNAL OF MOLECULAR GRAPHICS MODELLING, Vol. 77, No. null, 2017, s. 399-412, ISSN: 1093-3263
KAYİK GULRU,TÜZÜN NURCAN,DURDAĞI SERDAR
|
Investigating the interactions of Axitinib, a tyrosine kinase inhibitor, with DNA: experimental studies, molecular docking, and molecular dynamics simulations
Nucleosides, Nucleotides & Nucleic Acids, Haziran 2025, ISSN: 1525-7770
ŞENEL PELİN,AL FAYSAL ABDULLAH,AĞAR SOYKAN,YURTSEVER MİNE,GÖLCÜ AYŞEGÜL
|
Collective Dynamics of Eco-RI DNA Complex by Elastic Network Model and Molecular Dynamics Simulations
Journal of Biomolecular Structure and Dynamics, Vol. 24, No. 1, Ağustos 2006, s. 1-15, ISSN: 0739-1102
DORUKER TURGUT PEMRA,NILSSON LENNART,KÜRKÇÜOĞLU AYŞE ÖZGE
|
Molecular dynamics simulations can predict the optimum drug loading amount in pectin hydrogels for controlled release
Materials Today Communications, Vol. 31, Haziran 2022, ISSN: 2352-4928
KOCAAGA BANU, GÜNER FATMA SENİHA, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
|
Graphene oxide-based and porous nanocarriers for drug delivery developed with computational and experimental approaches
SURFACES AND INTERFACES, Vol. 76, Kasım 2025, s. 14, ISSN: 2468-0230
GÜNER-YILMAZ ZEYNEP,KOCAAĞA AYŞE BANU,YILMAZ ANIL,BALÇIK MARCEL,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,SUNGUR FETHİYE AYLİN,YAVUZ REHA,KARATEPE YAVUZ NİLGÜN,TATLIER MELKON,SİRKECİOĞLU AHMET,HOOSHMAND SARA,MİAVAGHİ MEHRAN ALİARİ,ZABARA MOHAMMED AHMED,YÜRÜM ALP,BAYAZIT MUSTAFA KEMAL,BATIREL SAİME,GÜNER FATMA SENİHA
|
On determining the thermal state of individual atoms in molecular dynamics simulations of nonequilibrium processes in solids
Chemical Physics Letters, Vol. 506, No. 4-6, Nisan 2011, s. 290-297, ISSN: 00092614
FU YAO,KIRCA MESUT,TO ALBERT CHIFU
|
Investigation of Grain Size Effect on the Tensile Behavior of Nano-Crystalline Aluminum by Molecular Dynamics Simulations
International Conference on Physical Chemistry and Functional Materials (PCMF'18), Elazığ/TÜRKİYE, 19 Haziran 2018, s. 207-207
DEĞİRMENCİ ÜNAL,ERTÜRK AHMET SEMİH,YILDIZ YUNUS ONUR,KIRCA MESUT
|
Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model
Frontiers in Molecular Biosciences, Vol. 7, Eylül 2020, ISSN: 2296-889X
GÜZEL PELİN,YILDIRIM HATİCE ZEYNEP,YÜCE MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
|
Mechanical enhancement of an aluminum layer by graphene coating
JOURNAL OF MATERIALS RESEARCH, Vol. 33, No. 18, Eylül 2018, s. 2741-2751, ISSN: 0884-2914
ERTURK AHMET SEMİH,KIRCA MESUT,KIRKAYAK LEVENT
|
Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model
Frontiers in Molecular Biosciences, Vol. 7, Eylül 2020, ISSN: 2296-889X
GÜZEL PELİN,YILDIRIM HATİCE ZEYNEP,YÜCE MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
|
Synthesis, molecular docking and molecular dynamics studies of novel tacrine-carbamate derivatives as potent cholinesterase inhibitors
BIOORGANIC CHEMISTRY, Vol. 115, Ekim 2021, ISSN: 0045-2068
ÖZTEN ÖZGE, ZENGİN KURT BELMA, SÖNMEZ FATİH, DOĞAN BERNA, DURDAĞI SERDAR
|
Exploring the Role of Solvent Properties in the Permeance of Ti3C2O2 Nanofiltration Membranes Through Molecular Dynamics Simulations
MEMTEK2025, İzmir/TÜRKİYE, 12 Kasım 2025, s. 217-218
BAYSAL TUĞBA,GÜVENSOY MORKOYUN AYSA,TANTEKİN-ERSOLMAZ S. BİRGUL,VELİOĞLU SADİYE
|
Reverse non-equilibrium molecular dynamics simulations on the thermal conductivity of three-dimensional graphene nano-ribbon foams
JOURNAL OF PHYSICS AND CHEMISTRY OF SOLIDS, Vol. 136, No. 109130, Ocak 2020, s. 1-9, ISSN: 0022-3697
DEĞİRMENCİ ÜNAL,KIRCA MESUT
|
Understanding membrane fouling by oil-in-water emulsion via experiments and molecular dynamics simulations
Journal of Membrane Science, Vol. 566, Ocak 2018, s. 140-150, ISSN: 0376-7388
TANİS-KANBUR MELİKE BEGUM,VELİOĞLU SADİYE,TANUDJAJA HENRY J.,HU XİAO,JİA WEİ CHEW
|