A drug repurposing study to target bacterial ribosome decoding center with molecular docking and molecular dynamics simulations
LİSANSÜSTÜ EĞİTİM ENSTİTÜSÜ, İSTANBUL TEKNİK ÜNİVERSİTESİ, 2024
BERİL ATEŞ ULUTÜRK
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Investigating allosteric modulators for pathogenic enzymes using molecular docking and molecular dynamics simulations
LİSANSÜSTÜ EĞİTİM ENSTİTÜSÜ, İSTANBUL TEKNİK ÜNİVERSİTESİ, 2025
MERVE YÜCE
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Investigating the Conformational Heterogeneity of CCR5 by Molecular Dynamics Simulations
11th Visegrad Symposium on Biomolecular Interactions, Röjtökmuzsaj/MACARİSTAN, 20 Haziran 2023
DOĞAN BERNA,DURDAĞI SERDAR
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Molecular dynamics simulations of the dissolution of lactose crystals
Deutsche Physikalische Gesellschaft DPG Spring Meeting, Dresden/ALMANYA, 30 Mart 2014
DOĞAN BERNA,SCHNEİDER JULİAN,REUTER KARSTEN
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Uniaxial Strain and Stress Controlled Cyclic Responses of Ultrahigh Molecular Weight Polyethylene Experiments and Model Simulations
Journal of Engineering Materials and Technology, Transactions of the ASME, 2011
ÇOLAK ÖZGEN ÜMİT
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Tensile characteristics of boron nanotubes by using reactive molecular dynamics simulations
Elsevier BV, Vol. 209, Haziran 2022, ISSN: 0927-0256
ÇALIŞKAN ERDEM, KIRCA MESUT
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Development of Optimal Linkers for Stapled Peptides Using Molecular Simulations
Oligonucleotide and Peptide Therapeutics Boston, 27 Mart 2017
BADAY SEFER
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Investigation of drug resistance mechanisms for antiandrogen prostate cancer drug enzalutamide using molecular dynamics simulations
BİLİŞİM ENSTİTÜSÜ, İSTANBUL TEKNİK ÜNİVERSİTESİ, 2020
BEHZAD ASLANI AVILAQ
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Molecular dynamics simulations of carbon-aluminum nanocomposites
FEN BİLİMLERİ ENSTİTÜSÜ, İSTANBUL TEKNİK ÜNİVERSİTESİ, 2017
AHMET SEMİH ERTÜRK
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Investigation of the misfolding pathway of different prion variants via molecular dynamics simulations
FEN BİLİMLERİ ENSTİTÜSÜ, İSTANBUL TEKNİK ÜNİVERSİTESİ, 2015
FULYA ECEM KESKİN
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Determining mechanical properties of coated nanoporous Al-Cu structures by using molecular dynamics simulations
FEN BİLİMLERİ ENSTİTÜSÜ, İSTANBUL TEKNİK ÜNİVERSİTESİ, 2013
ESRA İÇER
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Molecular dynamics simulations on the structure and interfacial interactions of polyethylene-organoclay nanocomposites
FEN BİLİMLERİ ENSTİTÜSÜ, İSTANBUL TEKNİK ÜNİVERSİTESİ, 2011
EROL YILDIRIM
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Investigating the interactions of Axitinib, a tyrosine kinase inhibitor, with DNA: experimental studies, molecular docking, and molecular dynamics simulations
Nucleosides, Nucleotides & Nucleic Acids, Haziran 2025, ISSN: 1525-7770
ŞENEL PELİN,AL FAYSAL ABDULLAH,AĞAR SOYKAN,YURTSEVER MİNE,GÖLCÜ AYŞEGÜL
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Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model
Frontiers in Molecular Biosciences, Vol. 7, Eylül 2020, ISSN: 2296-889X
GÜZEL PELİN,YILDIRIM HATİCE ZEYNEP,YÜCE MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
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Monte Carlo and Molecular Dynamics Simulations suggest controlled release of corticosteroids from mesoporous host MIL-101 (Cr)
MOLECULAR SIMULATION, Vol. 47, No. 18, Aralık 2021, s. 1530-1539, ISSN: 0892-7022
AYVAZ KÖROĞLU MERVE, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, SUNGUR FETHİYE AYLİN
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Molecular Mechanism of Protein Arginine Deiminase 2: A Study Involving Multiple Microsecond Long Molecular Dynamics Simulations
BIOCHEMISTRY, Ocak 2022, s. 12, ISSN: 0006-2960
ÇİÇEK ERDEM, MONARD GERALD, SUNGUR FETHİYE AYLİN
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Anncolvar: Approximation of Complex Collective Variables by Artificial Neural Networks for Analysis and Biasing of Molecular Simulations
Frontiers in Molecular Biosciences, Vol. 6, Nisan 2019, ISSN: -
TRAPL DALİBOR,MARESKA VACLAV,HORVACANİN IZABELA,OZCELİK FURKAN,ÜNAL GÖZDE,SPİWOK VOJTECH
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Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model
Frontiers in Molecular Biosciences, Vol. 7, Eylül 2020, ISSN: 2296-889X
GÜZEL PELİN,YILDIRIM HATİCE ZEYNEP,YÜCE MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
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Monte Carlo and Molecular Dynamics Simulations suggest controlled release of corticosteroids from mesoporous host MIL-101 (Cr)
Molecular Simulation, Vol. 47, Ocak 2021, ISSN: 0892-7022","1029-0435
AYVAZ KÖROĞLU MERVE, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, SUNGUR FETHİYE AYLİN
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Guide for Nonequilibrium Molecular Dynamics Simulations of Organic Solvent Transport in Nanopores: The Case of 2D MXene Membranes
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, Kasım 2024, ISSN: 1549-9618
GÜVENSOY MORKOYUN AYSA,VELİOĞLU SADİYE,BAYSAL TUĞBA,ERSOLMAZ ŞERİFE BİRGÜL
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