A Computationally Efficient Method to Generate Plausible Conformers for Ensemble Docking and Binding Free Energy Calculations
Journal of Chemical Information and Modeling, Vol. 65, Temmuz 2025, ISSN: 1549-9596
GÜNER-YILMAZ ÖZDE ZEYNEP,DORUKER TURGUT PEMRA,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
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Structural analysis of novel amino acid substitutions in SARS-CoV-2 spike protein receptor-binding domain
Hacettepe Journal of Biology and Chemistry, Vol. 49, No. 4, Haziran 2021, s. 367-374, ISSN: 1303-5002
BİTERGE SÜT BURCU
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Synthesis of Novel Tetracationic Phthalocyanines and Investigation of Their DNA Binding Properties
DYES AND PIGMENTS, Vol. 96, 2013, s. 475-482, ISSN: 0143-7208
EVREN DİDEM,KALKAN BURAT AYFER,ÖZÇEŞMECİ İBRAHİM,SESALAN BEHİCE ŞEBNEM
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Eu fod 3 binding on the 1H NMR spectra of bis 2 ethylbenzoate ethylene glycol podands
Magnetic Resonance in Chemistry, Vol. 51, No. 1, Ocak 2013, s. 42-45, ISSN: 07491581
ÜNLÜ CÜNEYT HÜSEYİN,YAPAR GÖNÜL,ÇAKIL ERK
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Elucidation of Mercury Ion Binding Property of a New Aryl Amide Type Podand by Electrochemical and Fluorescence Measurements
Analytical Letters, Vol. 42, No. 17, Kasım 2009, s. 2879-2892, ISSN: 0003-2719
GÜNEY SEVGİ,YAPAR GÖNÜL,GÜNEY ORHAN,YILDIZ GÜLCEMAL
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Selection of phage displayed peptides that block binding of Vascular Endothelial Growth Factor VEGF to VEGF Receptor
28th International Meeting of the Federation of European Biochemical Societies, İstanbul/TÜRKİYE, Vol. 269, 20 Ekim 2002, ISSN: 0014-2956
ERDAĞ BERRİN,BALCIOĞLU KORAY,KUMBASAR ASLI,ÇIRAKOĞLU BEYAZIT
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A Novel Ferrocenyl Naphthoquinone Fused Crown Ether as a Multisensor for Water Determination in Acetonitrile and Selective Cation Binding
The Journal of Physical Chemistry B, Vol. 119, No. 38, Eylül 2015, s. 12464-12479, ISSN: 1520-6106
DAĞDEVREN METİN,YILMAZ İSMAİL,YÜCEL BARIŞ,EMİRİK MUSTAFA
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The analysis of interactions between DNA and small molecules: proposals for binding mechanisms based on computational data
monatshefte für chemie, Ocak 2022, ISSN: 0026-9247
KATIRCI RAMAZAN, ÖZÇEŞMECİ İBRAHİM, SESALAN BEHİCE ŞEBNEM
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Facial Control of Nanoparticle Binding to Cytochrome
Journal of the American Chemical Society, Vol. 129, No. 10, Şubat 2007, s. 2732-2733, ISSN: 0002-7863
BAYRAKTAR HALİL,YOU CHANGCHENG,ROTELLO VİNCENT M,KNAPP MİCHAEL J
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Elucidating the leaching effect of micro-/nano-plastics on the binding, structural, and oxidative characteristics of bovine serum albumin and its impact on cytotoxicity and oxidative stress in the human lung cancer cell line A549
Environmental Science: Nano, Vol. 12, Ocak 2025, ISSN: 2051-8153
BAYSAL ASLI,SAYGIN HASAN,SOYOCAK AHU,KAHRAMAN MEHMET,APAYDIN EMRE,ÖZBEK SARICA PEMRA
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Electrochemical spectroelectrochemical and pyridine binding properties of tetrathia macrocycle bridged dimeric cobalt phthalocyanine
Polyhedron, Vol. 23, No. 7, Nisan 2004, s. 1279-1285, ISSN: 02775387
YILMAZ İSMAİL,KOÇAK MAKBULE
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Repurposing of FDA-approved drugs against active site and potential allosteric drug-binding sites of COVID-19 main protease
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, Vol. 89, No. 11, Ocak 2021, s. 1425-1441, ISSN: 0887-3585
YÜCE MERVE, ÇİÇEK ERDEM, DAĞ ASLIHAN BAŞAK, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, SUNGUR FETHİYE AYLİN
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Mechanism of interactions of dsDNA binding with quercetin and its two novel sulfonate derivatives using multispectroscopic, voltammetric, and molecular docking studies
Elsevier BV, Vol. 1276, Mart 2023, ISSN: 0022-2860
BEKAR YILDIRMAZ BUŞRA, ŞENEL PELİN, ERDOĞAN TANER, ALTAY FİLİZ, GÖLCÜ AYŞEGÜL
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Photophysicochemical, calf thymus DNA binding and in vitro photocytotoxicity properties of tetra-morpholinoethoxy-substituted phthalocyanines and their water-soluble quaternized derivatives
Journal of Biological Inorganic Chemistry, Ocak 2017, ISSN: 0949-8257
SESALAN BEHİCE ŞEBNEM,ÖZÇEŞMECİ İBRAHİM,KALKAN BURAT AYFER,DURMUŞ MAHMUT,GÖKSEL ŞAHİN MELTEM,KOÇAN HALİT,KAYA KEREM
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SOD activity and DNA binding properties of a new symmetric porphyrin Schiff base ligand and its metal complexes
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2015
ÇAY SEVİM,KÖSE MUHAMMET,TÜMER FERHAN,GÖLCÜ AYŞEGÜL,TÜMER MEHMET
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Directed Self immobilization of alkaline phosphatase on micro patterned substrates via genetically fused metal binding peptide
Biotechnology and Bioengineering, Vol. 103, No. 4, 2009, s. 696-705
KAÇAR T,MT ZİN,SO C,WİLSON B,MA H,GÜL-KARAGÜLER NEVİN,JEN AKY,AKY JEN,SARIKAYA M,TAMERLER C
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Acridine derivated receptor for selective mercury binding based on chelation enhanced fluorescence effect
Journal of Luminescence, Vol. 132, No. 10, Ekim 2012, s. 2736-2740, ISSN: 00222313
KARAGÖZ FEHMİ,GÜNEY ORHAN,KANDAZ MEHMET,BİLGİÇLİ AHMET TURGUT
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Elucidation of binding interactions and mechanism of rivastigmine tartrate with dsDNA via multi-spectroscopic, electrochemical, and molecular docking studies
Journal of Molecular Structure, Vol. 1268, Ocak 2022, ISSN: 0022-2860
ALİZADEH NEDA, ŞENEL PELİN, ERDOĞAN TANER, GÖLCÜ AYŞEGÜL
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Local and Global Motions Underlying Antibiotic Binding in Bacterial Ribosome
Journal of Chemical Information and Modeling, Vol. 60, No. 12, Aralık 2020, s. 6447-6461, ISSN: 1549-9596
KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,GUNES M UNAL,HALİLOĞLU TÜRKAN
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Exploring the binding capacity of lactic acid bacteria derived bacteriocins against RBD of SARS-CoV-2 Omicron variant by molecular simulations
Journal of Biomolecular Structure and Dynamics, Vol. 41, No. 20, Ocak 2023, s. 10774-10784, ISSN: 0739-1102
EROL ISMAİL, KOTİL ENES SEYFULLAH, ORTAKCI FATİH, DURDAĞI SERDAR
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