Investigating the interactions of Axitinib, a tyrosine kinase inhibitor, with DNA: experimental studies, molecular docking, and molecular dynamics simulations
Nucleosides, Nucleotides & Nucleic Acids, Haziran 2025, ISSN: 1525-7770
ŞENEL PELİN,AL FAYSAL ABDULLAH,AĞAR SOYKAN,YURTSEVER MİNE,GÖLCÜ AYŞEGÜL
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Synthesis, Biological Activities, Antioxidant Properties, and Molecular Docking Studies of Novel Bis-Schiff Base Podands as Responsive Chemosensors for Anions
JOURNAL OF MOLECULAR STRUCTURE, Vol. 1266, Ekim 2022, ISSN: 0022-2860
YAPAR GÖNÜL, DEMİR NESLİHAN, KİRAZ AŞKIN, YALÇIN ÖZKAT GÖZDE, YILDIZ MUSTAFA
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The affinity of histamine to serum albumin: Capillary electrophoresis‐frontal analysis and in‐silico molecular docking approaches
JOURNAL OF SEPARATION SCIENCE, Vol. 46, Eylül 2023, ISSN: 1615-9306
KALAYCIOĞLU ZEYNEP
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Design and synthesis of novel caffeic acid phenethyl ester (CAPE) derivatives and their biological activity studies in glioblastoma multiforme (GBM) cancer cell lines
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, Vol. 113, Haziran 2022, ISSN: 1093-3263
SUCU BİLGESU ONUR, KOÇ ELİF BEYZA, SAVLUĞ İPEK ÖZGECAN, MİRAT AFRANUR, ALMAS FURKAN, GÜZEL MELİKE AYBALA, DOĞAN BERNA, ULUDAĞ DAMLA, KARAKAŞ NİHAL, DURDAĞI SERDAR, GÜZEL MUSTAFA
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Swift-Docking: Neural Network-Based Method to Speed Up Molecular Docking
5TH INTERNATIONAL SYMPOSIUM ON BIOINFORMATICS, istanbul/TÜRKİYE, 15 Aralık 2021
BANDE ABDULSALAM YAZİD,BADAY SEFER
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Comparative study of cytotoxic activities, DNA binding and molecular docking interactions of anticancer agent epirubicin and its novel copper complex
Journal of Molecular Structure, Vol. 1232, Ocak 2021, ISSN: 0022-2860
ADIMCILAR VESELİNA, ÇEŞME MUSTAFA, ŞENEL PELİN, DANIŞ İBRAHİM, ÜNAL DURİŞEHVAR, GÖLCÜ AYŞEGÜL
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Accelerating molecular docking using machine learning methods
BİLİŞİM ENSTİTÜSÜ, İSTANBUL TEKNİK ÜNİVERSİTESİ, 2022
ABDULSALAM YAZID BANDE
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Molecular docking study on the DNA binding domain of master regulator of the mammalian HSR protein
FEN BİLİMLERİ ENSTİTÜSÜ, İSTANBUL TEKNİK ÜNİVERSİTESİ, 2020
GÜLBAHAR BOZAN
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Structural dependence of protein binding and vibrational spectra of some odor molecules: Molecular docking and TD-DFT study
LİSANSÜSTÜ EĞİTİM ENSTİTÜSÜ, İSTANBUL TEKNİK ÜNİVERSİTESİ, 2023
AYSUN SIRMA
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Molecular docking study on the DNA binding domain of master regulator of the mammalian HSR protein
FEN BİLİMLERİ ENSTİTÜSÜ, İSTANBUL TEKNİK ÜNİVERSİTESİ, 2020
GÜLBAHAR BOZAN
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Combining molecular docking, molecular dynamics and machine learning approaches in an active
learning scheme
Joint 50th Congress of the Physical Chemistry Division of the Società Chimica Italiana and the 5th European Conference on Physical Chemistry (, Pisa/İTALYA, 29 Haziran 2025
DOĞAN BERNA,ÖZÖNDER ŞENER,AVŞAR TİMUÇİN,DURDAĞI SERDAR
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In Silico Prediction and Molecular Docking of SNPs in NRP1 Gene Associated with SARS-COV-2
Biochemical Genetics, Haziran 2024, ISSN: 1573-4927
ÖZKAN OKTAY EBRU,KAMAN TUĞBA,KARASAKAL ÖMER FARUK,ENİSOĞLU ATALAY VİLDAN
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Synthesis, biological evaluation and molecular docking of novel 2-pyrazoline-1-carboxamides as anti-Alzheimer agents
Future Medicinal Chemistry, Aralık 2025, ISSN: 1756-8919
SUNGUR FETHİYE AYLİN,TOK FATİH,BADAY SEFER,KEMALOĞLU FATİH,KUZU ZEYNEP SUDE,ÖZER FUNDA ALEYNA,SICAK YUSUF,ÖZTÜRK MEHMET
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Quantitative study on a simple electrochemical dsDNA-pregabalin biosensor; multi-spectroscopic, molecular docking and modelling studies
Journal of Pharmaceutical and Biomedical Analysis, Vol. 116261, No. 1, Eylül 2024, s. 1-10, ISSN: 0731-7085
ŞENEL PELİN,ABDULLAH AL FAYSAL ABDULLAH AL,ERDOĞAN TANER,DOĞAN MUSTAFA,GÖLCÜ AYŞEGÜL
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Investigation of supramolecular interaction of quercetin with N,N-dimethylamine-functionalized p-sulfonated calix[4,8]arenes using molecular modeling and their in vitro cytotoxic response towards selected cancer cells
NEW JOURNAL OF CHEMISTRY, Vol. 45, No. 39, Ekim 2021, s. 18443-18452, ISSN: 1144-0546
MEHMET OĞUZ, DOĞAN BERNA, DURDAĞI SERDAR, KARAKURT SERDAR, YILMAZ MUSTAFA
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Mechanism of interactions of dsDNA binding with quercetin and its two novel sulfonate derivatives using multispectroscopic, voltammetric, and molecular docking studies
Elsevier BV, Vol. 1276, Mart 2023, ISSN: 0022-2860
BEKAR YILDIRMAZ BUŞRA, ŞENEL PELİN, ERDOĞAN TANER, ALTAY FİLİZ, GÖLCÜ AYŞEGÜL
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Investigation of Antimicrobial Activities and Molecular Docking Studies of Synthesized Sulfonamide Compounds
Pharmaceutical Chemistry Journal, Vol. 57, Aralık 2023, ISSN: 0091-150X
ÖZBEY GÖKBEN,YILDIZ GÜLCEMAL,ŞENKAL BAHİRE FİLİZ,KORKMAZ BURAK,OTLU BARIŞ,ERKAN S,BULUT N,TANRIVERDİ EÇİK ESRA,ZİGO F
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Determination of the inhibition effect of hesperetin and its derivatives on Candida glabrata by molecular docking method
The European Chemistry and Biotechnology Journal, Ocak 2024, ISSN: 3023-5839
ENİSOĞLU ATALAY VİLDAN,ASAR ŞEMSE
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High Performance Liquid Chromatography-Tandem Mass Spectrometric determination of carcinogen nitrosamine impurities from pharmaceuticals and DNA binding confirmation aided by molecular docking application
İstanbul Journal of Pharmacy, Vol. 54, Aralık 2024, s. 386-394, ISSN: 2587-2087
DANIŞ İBRAHİM,AĞAR SOYKAN,YURTSEVER MİNE,ÜNAL DURİ ŞEHVAR
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Mechanism of Interactions of dsDNA Binding with Apigenin and Its Sulfamate Derivatives Using Multispectroscopic, Voltammetric, and Molecular Docking Studies
ACS Omega, Vol. 6, Ocak 2021, ISSN: 2470-1343
WAİHENYA SİMON, ŞENEL PELİN, J. OSONGA FRANCİS, ERDOĞAN TANER, ALTAY FİLİZ, GÖLCÜ AYŞEGÜL, A. SADİK OMOWUNMİ
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